PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy11g02260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 222aa MW: 26180.1 Da PI: 5.0039 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 23.5 | 1.4e-07 | 114 | 136 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k+F+ +s L H+rtH Bathy11g02260 114 HECDVCEKVFRYPSGLAIHMRTH 136 78********************9 PP | |||||||
2 | zf-C2H2 | 27.3 | 8.6e-09 | 142 | 164 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++ nLk+H+r H Bathy11g02260 142 YECDVCEKRFTQSGNLKTHMRIH 164 99*******************99 PP | |||||||
3 | zf-C2H2 | 27.6 | 7e-09 | 170 | 192 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k F+++s+Lk+H+ H Bathy11g02260 170 YECEVCDKAFRDSSTLKSHMLIH 192 99******************998 PP | |||||||
4 | zf-C2H2 | 22.7 | 2.5e-07 | 198 | 221 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ C ks+++ +L+ H+rt H Bathy11g02260 198 YECHECEKSYRQLGSLQYHMRTqH 221 99********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 9.1E-4 | 114 | 136 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 7.7E-6 | 114 | 136 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 14.482 | 114 | 141 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.0E-15 | 114 | 143 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 116 | 136 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.97E-24 | 122 | 179 | No hit | No description |
SMART | SM00355 | 4.5E-5 | 142 | 164 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 1.2E-6 | 142 | 164 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 16.498 | 142 | 169 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 144 | 164 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.2E-18 | 144 | 164 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.06E-19 | 164 | 216 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-17 | 165 | 189 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 15.833 | 170 | 197 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.6E-4 | 170 | 192 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 1.6E-6 | 170 | 192 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 172 | 192 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.6E-14 | 190 | 219 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.001 | 198 | 221 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 2.0E-5 | 198 | 221 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.822 | 198 | 221 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 200 | 221 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MSSRRRKNPH PKRAVNARTV LKVAREEEEV EEEPKVLCLR IPDEDDDLEA NQIQKEEEEG 60 EDEEDEEDDE GDDDDVERLR RILCVPCDDL VEQNQMREEE TAFIAKGVKR KRGHECDVCE 120 KVFRYPSGLA IHMRTHTKEK PYECDVCEKR FTQSGNLKTH MRIHTSERPY ECEVCDKAFR 180 DSSTLKSHML IHTNEKPYEC HECEKSYRQL GSLQYHMRTQ H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ml2_A | 1e-27 | 115 | 218 | 5 | 146 | Zinc finger and BTB domain-containing protein 24 |
6ml3_A | 1e-27 | 115 | 218 | 5 | 146 | Zinc finger and BTB domain-containing protein 24 |
6ml4_A | 1e-27 | 115 | 218 | 5 | 146 | Zinc finger and BTB domain-containing protein 24 |
6ml5_A | 1e-27 | 115 | 218 | 5 | 146 | Zinc finger and BTB domain-containing protein 24 |
6ml6_A | 1e-27 | 115 | 218 | 5 | 146 | Zinc finger and BTB domain-containing protein 24 |
6ml7_A | 1e-27 | 115 | 218 | 5 | 146 | Zinc finger and BTB domain-containing protein 24 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082268 | 0.0 | FO082268.1 Bathycoccus prasinos genomic : Chromosome_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007510057.1 | 1e-161 | PREDICTED: zinc finger protein 347-like | ||||
TrEMBL | K8EJP7 | 1e-160 | K8EJP7_9CHLO; PREDICTED: zinc finger protein 347-like | ||||
STRING | XP_007510057.1 | 1e-161 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 3e-11 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19012906 |