PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy11g01580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 246aa MW: 29369.8 Da PI: 7.388 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 26.3 | 1.8e-08 | 82 | 104 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k+F+ +s+L rH+rtH Bathy11g01580 82 HECDVCEKVFRYPSYLARHMRTH 104 78********************9 PP | |||||||
2 | zf-C2H2 | 23.5 | 1.4e-07 | 110 | 132 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+Fs++ +L+ H r H Bathy11g01580 110 YECDVCEKRFSQSGHLQDHVRIH 132 99*******************99 PP | |||||||
3 | zf-C2H2 | 22.7 | 2.5e-07 | 138 | 160 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k F+++ L++H r H Bathy11g01580 138 YECDVCDKAFRTSGGLTQHKRIH 160 99*******************99 PP | |||||||
4 | zf-C2H2 | 20.2 | 1.6e-06 | 166 | 188 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C ++F+++ nL++H+r H Bathy11g01580 166 YECDVCEMRFRHSCNLQTHMRIH 188 99*******************99 PP | |||||||
5 | zf-C2H2 | 24.6 | 6.5e-08 | 194 | 216 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k+F+++ +L++H+r H Bathy11g01580 194 FECDVCEKRFRQSGSLTQHMRIH 216 89*******************99 PP | |||||||
6 | zf-C2H2 | 20.8 | 1e-06 | 222 | 245 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C C k++++ s Lk H+rt H Bathy11g01580 222 FECDVCEKRYRQLSGLKYHMRTqH 245 89********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00096 | 2.3E-6 | 82 | 104 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.6E-4 | 82 | 104 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.7E-14 | 82 | 111 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 14.648 | 82 | 109 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 84 | 104 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.51E-24 | 90 | 147 | No hit | No description |
SMART | SM00355 | 2.0E-4 | 110 | 132 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.186 | 110 | 137 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13894 | 3.4E-4 | 110 | 132 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.9E-18 | 112 | 139 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 112 | 132 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.02E-11 | 137 | 169 | No hit | No description |
SMART | SM00355 | 3.1E-4 | 138 | 160 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.02 | 138 | 165 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.9E-4 | 138 | 161 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.8E-17 | 140 | 167 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 140 | 160 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0023 | 166 | 188 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 15.147 | 166 | 193 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 0.012 | 166 | 188 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 168 | 188 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.0E-15 | 168 | 187 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.77E-23 | 175 | 231 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.9E-18 | 188 | 213 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF00096 | 8.5E-6 | 194 | 216 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 8.9E-5 | 194 | 216 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.29 | 194 | 221 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 196 | 216 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.9E-15 | 214 | 243 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0023 | 222 | 245 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.177 | 222 | 245 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13894 | 7.0E-4 | 222 | 245 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 224 | 245 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MSSRRRKNPH PKRAVNARTV LKGEKEEPNL VLCSRIPDED DDFNEANHHQ IQKEEEEGEE 60 DEDEEDEEEI TVRKGTKRKR GHECDVCEKV FRYPSYLARH MRTHTKDKPY ECDVCEKRFS 120 QSGHLQDHVR IHTNEKPYEC DVCDKAFRTS GGLTQHKRIH TKEKPYECDV CEMRFRHSCN 180 LQTHMRIHTN EKPFECDVCE KRFRQSGSLT QHMRIHTNEK PFECDVCEKR YRQLSGLKYH 240 MRTQH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 1e-40 | 82 | 243 | 13 | 188 | Aart |
2i13_B | 1e-40 | 82 | 243 | 13 | 188 | Aart |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082268 | 0.0 | FO082268.1 Bathycoccus prasinos genomic : Chromosome_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007510241.1 | 0.0 | PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein | ||||
Swissprot | P10073 | 7e-54 | ZSC22_HUMAN; Zinc finger and SCAN domain-containing protein 22 | ||||
TrEMBL | K8EKM1 | 1e-180 | K8EKM1_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein) | ||||
STRING | XP_007510241.1 | 0.0 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 1e-10 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19012838 |