PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy11g01110
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family E2F/DP
Protein Properties Length: 916aa    MW: 101782 Da    PI: 5.1855
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy11g01110genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP40.45e-136016433071
        E2F_TDP  30 vakeLvsedvknkrRRiYDilNVLealnliek....kekneirwkg 71 
                    + ++    d+kn+rRR+YD+lNVL a+n++++    ++k+ i+w+g
  Bathy11g01110 601 ANETV---DEKNIRRRVYDALNVLIAINVVSRdkneEKKKTITWNG 643
                    44444...8999********************999999999***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-10453494IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.7E-13454643IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.6E-14457643IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-14594644IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.17E-8600644IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011383.1E-34704870IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440749.42E-7704752No hitNo description
CDDcd144581.68E-23720854IPR014889Transcription factor DP, C-terminal
PfamPF087816.3E-16792867IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.88E-17799855No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 916 aa     Download sequence    Send to blast
METSIANAFS LEQSPENLLL RTRKSSVQSL SDSIESIIPR EVNVNVACTL DPKSWITFLT  60
RRPEPWWWSS SSSATPRSSS GAESITESSS VFVHACFRNI ILLNCAETVE KKISKILHFE  120
RSALKEQSIM RPSAARTSSS PPHIVPLLTD DDSDDENKRL DRELHKDLVN SLRDTGVYDF  180
ANEFDILPQS SSPNDNNNKG GERGHGGADV SSPLKGMVVE GNRSSQAHQY HRRGGNESGF  240
SPPSSSMIDH DAGGRHRPLT GLARDGSPAT VFGGKMGTSP PMSARRNANN LSSLSKGMTN  300
NTNSGGRGDD RRVRPPLFAT NTVTASTNDA LTKENDAIIG AKQQVEQKDP YDEKEANEAR  360
DASTKLLVQI AEYLESTKTE EERELEEKRK EAASGRKRKT PVKKSGAAVK KEEEENDVVG  420
NNAMIMSTPP PSLSRKGSNA AATTTPNVNA TPQQIKGGLK SFAMKVCEKV KERGTTTYDE  480
VSDALVADVL AEREKEGIPL SIGGGSNRKK VNKKKEDEEE EEEEEEEEGN EDEAMTEGDG  540
LSSPIRRNKV EVKVKVKDDD DTKEATIEDD GKKKKANKTP PSKSGTTTPQ GTKEKKKSKR  600
ANETVDEKNI RRRVYDALNV LIAINVVSRD KNEEKKKTIT WNGIGEEFGE AFLYGDLAAP  660
PRDKNEKQDD AKREKDVIMK KKKEEEEEEE EEQMIMKKEE LTVEEQEENE TENRETRERI  720
RKKALYLAEL TEQFDALLSL VQRNERNEIE AQKKVATPKK ESSTMAEGAT TKKGGASASA  780
KKKSAKKDNV ETTTTVAEDD DVPSVPDGIQ LPFILVQTDQ KATVEVEISE DQRVVHFDFN  840
ESPFQVYDGN YVLKHTEGIQ TEMAKMKKER MQRLGVKKYD ESIFQSPEEE KEEEEEEVPQ  900
ATTPKKAKRT KKTPP*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822680.0FO082268.1 Bathycoccus prasinos genomic : Chromosome_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007510113.10.0predicted protein
TrEMBLK8FA340.0K8FA34_9CHLO; Uncharacterized protein
STRINGXP_007510113.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP15991417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.21e-15Transcription factor DP