PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy10g02910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 215aa MW: 25968.2 Da PI: 8.0788 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 25.1 | 4.5e-08 | 23 | 45 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k+F+ +s L++H+rtH Bathy10g02910 23 HECDVCEKVFRYPSKLVSHMRTH 45 78********************9 PP | |||||||
2 | zf-C2H2 | 29 | 2.5e-09 | 51 | 73 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++ nL++H+rtH Bathy10g02910 51 YECDVCEKRFTTSGNLTNHMRTH 73 99********************9 PP | |||||||
3 | zf-C2H2 | 27 | 1.1e-08 | 79 | 101 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++ nL++H+r H Bathy10g02910 79 YECDVCEKRFTTSGNLTNHMRFH 101 99*******************99 PP | |||||||
4 | zf-C2H2 | 24.8 | 5.4e-08 | 107 | 129 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C++ F++ +L++H+r H Bathy10g02910 107 FECDVCDEAFRQLGHLQSHMRIH 129 89*******************99 PP | |||||||
5 | zf-C2H2 | 20.2 | 1.6e-06 | 135 | 157 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C ++Fs+ +L++H r H Bathy10g02910 135 YECDFCERHFSQLGTLQNHVRIH 157 99*******************99 PP | |||||||
6 | zf-C2H2 | 25.3 | 3.9e-08 | 163 | 185 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C ++F+ +s+Lk+H+r H Bathy10g02910 163 YECEVCERCFRESSTLKVHMRIH 185 99*******************99 PP | |||||||
7 | zf-C2H2 | 23.2 | 1.7e-07 | 191 | 214 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ C + F+++sn++rH+rt H Bathy10g02910 191 YECEACEMKFRQSSNFRRHMRTqH 214 99********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.3E-14 | 22 | 52 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 14.96 | 23 | 50 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 7.7E-4 | 23 | 45 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 3.6E-6 | 23 | 45 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.72E-19 | 23 | 73 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 25 | 45 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 16.249 | 51 | 78 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.8E-5 | 51 | 73 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 3.2E-7 | 51 | 73 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.1E-17 | 53 | 80 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 53 | 73 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.35E-23 | 60 | 116 | No hit | No description |
SMART | SM00355 | 1.7E-4 | 79 | 101 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.02 | 79 | 106 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 3.2E-6 | 79 | 101 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.8E-17 | 81 | 108 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 81 | 101 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.3E-4 | 107 | 129 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 4.7E-6 | 107 | 129 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 15.625 | 107 | 134 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 109 | 129 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.8E-16 | 109 | 128 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.64E-21 | 115 | 172 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.3E-16 | 129 | 154 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0011 | 135 | 157 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13894 | 0.0011 | 135 | 157 | No hit | No description |
PROSITE profile | PS50157 | 15.189 | 135 | 162 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 137 | 157 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-16 | 155 | 182 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.39E-19 | 157 | 209 | No hit | No description |
PROSITE profile | PS50157 | 16.165 | 163 | 190 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0019 | 163 | 185 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 1.4E-5 | 163 | 185 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 165 | 185 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.6E-15 | 183 | 212 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0011 | 191 | 214 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 1.4E-5 | 191 | 214 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.03 | 191 | 214 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 193 | 214 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MDEQIRKEEP TFRKGSKRKR TQHECDVCEK VFRYPSKLVS HMRTHTNERP YECDVCEKRF 60 TTSGNLTNHM RTHTNERPYE CDVCEKRFTT SGNLTNHMRF HTNEKPFECD VCDEAFRQLG 120 HLQSHMRIHT NEKPYECDFC ERHFSQLGTL QNHVRIHTNE KPYECEVCER CFRESSTLKV 180 HMRIHTNEKP YECEACEMKF RQSSNFRRHM RTQH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 3e-50 | 23 | 212 | 7 | 188 | Aart |
2i13_B | 3e-50 | 23 | 212 | 7 | 188 | Aart |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082269 | 0.0 | FO082269.1 Bathycoccus prasinos genomic : Chromosome_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007510648.1 | 1e-156 | PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein | ||||
TrEMBL | K8EJH4 | 1e-155 | K8EJH4_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein) | ||||
STRING | XP_007510648.1 | 1e-156 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 2e-10 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19013366 |