PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy09g04220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 257aa MW: 30220.4 Da PI: 5.3007 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.2 | 7.6e-07 | 93 | 115 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k+F + s L H+r H Bathy09g04220 93 HECGVCEKVFVSASKLAEHMRIH 115 78*******************99 PP | |||||||
2 | zf-C2H2 | 27.8 | 6.2e-09 | 121 | 143 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++ nLk+H+r H Bathy09g04220 121 YECDVCEKRFTTSGNLKTHMRIH 143 99*******************99 PP | |||||||
3 | zf-C2H2 | 25.3 | 3.9e-08 | 149 | 171 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++s+Lk+H r H Bathy09g04220 149 YECDVCEKRFRTSSDLKSHKRIH 171 99*******************99 PP | |||||||
4 | zf-C2H2 | 24.4 | 7.4e-08 | 177 | 199 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+Fsr ++Lk+H+ H Bathy09g04220 177 YECDVCEKRFSRADSLKVHMHIH 199 99******************998 PP | |||||||
5 | zf-C2H2 | 24.4 | 7.2e-08 | 205 | 227 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+ F+++++Lk+H+r H Bathy09g04220 205 YECDVCDIAFRHSDTLKNHMRIH 227 99*******************99 PP | |||||||
6 | zf-C2H2 | 22.3 | 3.4e-07 | 233 | 256 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C C k+F+++s Lk+H+ t H Bathy09g04220 233 YECDVCEKRFTQSSGLKTHMCTqH 256 99*******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-14 | 92 | 122 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 5.7E-4 | 93 | 115 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 14.815 | 93 | 120 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.064 | 93 | 115 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 95 | 115 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.67E-24 | 101 | 158 | No hit | No description |
SMART | SM00355 | 2.3E-5 | 121 | 143 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.165 | 121 | 148 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 9.7E-7 | 121 | 143 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.6E-18 | 123 | 142 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 123 | 143 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.2E-16 | 143 | 166 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 2.7E-4 | 149 | 171 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.311 | 149 | 176 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 1.0E-5 | 149 | 171 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 151 | 171 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.2E-22 | 158 | 214 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.1E-19 | 167 | 197 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 2.6E-4 | 177 | 199 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 1.7E-5 | 177 | 199 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 15.542 | 177 | 204 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 179 | 199 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.9E-16 | 198 | 225 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.73E-20 | 199 | 251 | No hit | No description |
SMART | SM00355 | 2.5E-4 | 205 | 227 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 15.334 | 205 | 232 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 1.3E-5 | 205 | 227 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 207 | 227 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.2E-16 | 226 | 254 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.01 | 233 | 256 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.635 | 233 | 256 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 0.024 | 233 | 252 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 235 | 256 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MSRRKNPHPQ RAVNVKTVVV GDDEEEEQEP VLCLQIPPDE DDDVFVVVDD DDDGDDDDDD 60 DEEDDDNDYE KDEQIRKEET AFRKGTKRKR TQHECGVCEK VFVSASKLAE HMRIHTNERP 120 YECDVCEKRF TTSGNLKTHM RIHTKEKPYE CDVCEKRFRT SSDLKSHKRI HTNERPYECD 180 VCEKRFSRAD SLKVHMHIHT NEKPYECDVC DIAFRHSDTL KNHMRIHTNE KPYECDVCEK 240 RFTQSSGLKT HMCTQH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 8e-45 | 93 | 252 | 4 | 188 | Aart |
2i13_B | 8e-45 | 93 | 252 | 4 | 188 | Aart |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082270 | 0.0 | FO082270.1 Bathycoccus prasinos genomic : Chromosome_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007510973.1 | 0.0 | PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein | ||||
Swissprot | P10073 | 3e-53 | ZSC22_HUMAN; Zinc finger and SCAN domain-containing protein 22 | ||||
Swissprot | P17036 | 1e-53 | ZNF3_HUMAN; Zinc finger protein 3 | ||||
Swissprot | Q8NB50 | 3e-53 | ZFP62_HUMAN; Zinc finger protein 62 homolog | ||||
TrEMBL | K8F2J7 | 0.0 | K8F2J7_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein) | ||||
STRING | XP_007510973.1 | 0.0 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.1 | 1e-13 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19013928 |