PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy09g04110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 183aa MW: 21297.3 Da PI: 4.6251 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 25.2 | 4.1e-08 | 103 | 125 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F++ nLk+H r H Bathy09g04110 103 YECDVCEKCFTTAGNLKKHKRIH 125 99*******************99 PP | |||||||
2 | zf-C2H2 | 26 | 2.3e-08 | 131 | 153 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C k+Fs + +Lk+H+r H Bathy09g04110 131 YECEVCEKRFSESGSLKTHMRIH 153 99*******************99 PP | |||||||
3 | zf-C2H2 | 26.9 | 1.2e-08 | 159 | 182 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C C+k F++ +L++H+rt H Bathy09g04110 159 YECDVCDKAFRQYGHLQSHMRTqH 182 99********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.56E-14 | 85 | 131 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.3E-16 | 100 | 124 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF00096 | 5.3E-6 | 103 | 125 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.8E-4 | 103 | 125 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.29 | 103 | 130 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 105 | 125 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.94E-20 | 125 | 177 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-18 | 125 | 150 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF00096 | 1.7E-5 | 131 | 153 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 8.8E-5 | 131 | 153 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.124 | 131 | 158 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 133 | 153 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.3E-15 | 151 | 180 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.799 | 159 | 182 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 9.2E-7 | 159 | 182 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.5E-5 | 159 | 182 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 161 | 182 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MARRKNPHPQ RAVNVKTVVV GDDEEEEPVL CLQIPPDDDD DDVVVVVDDD DDDDDDDDDD 60 DDEMDEQTRK EETTFRKGSK RKRTQHECGV CEKSFSTDNE KPYECDVCEK CFTTAGNLKK 120 HKRIHTNEKP YECEVCEKRF SESGSLKTHM RIHTKERPYE CDVCDKAFRQ YGHLQSHMRT 180 QH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mey_C | 1e-23 | 86 | 180 | 2 | 83 | CONSENSUS ZINC FINGER |
1mey_F | 1e-23 | 86 | 180 | 2 | 83 | CONSENSUS ZINC FINGER |
1mey_G | 1e-23 | 86 | 180 | 2 | 83 | CONSENSUS ZINC FINGER |
2i13_A | 8e-23 | 86 | 180 | 18 | 188 | Aart |
2i13_B | 8e-23 | 86 | 180 | 18 | 188 | Aart |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082270 | 1e-164 | FO082270.1 Bathycoccus prasinos genomic : Chromosome_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007511163.1 | 1e-130 | PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein | ||||
Swissprot | P08155 | 2e-28 | KRH1_DROME; Krueppel homolog 1 | ||||
Swissprot | Q8TF45 | 2e-28 | ZN418_HUMAN; Zinc finger protein 418 | ||||
TrEMBL | K8F324 | 1e-129 | K8F324_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein) | ||||
STRING | XP_007511163.1 | 1e-129 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.1 | 9e-11 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19013979 |