PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy09g04040
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 310aa    MW: 36319.5 Da    PI: 4.449
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy09g04040genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2232e-07118140123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C k+F ++s+L  H+r H
  Bathy09g04040 118 HECDVCEKVFVSPSSLAIHMRIH 140
                    78*******************99 PP
2zf-C2H2262.3e-08146168123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C+ C+k+F+++ +Lk+H+r H
  Bathy09g04040 146 YECEVCKKCFRQSGDLKVHMRIH 168
                    99*******************99 PP
3zf-C2H2163.5e-05174190117
                    EEETTTTEEESSHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                    ykC  C k+F++ snLk
  Bathy09g04040 174 YKCDVCEKRFTQASNLK 190
                    9***************8 PP
4zf-C2H223.61.3e-07202224123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+ + +Lk H+r H
  Bathy09g04040 202 YECDVCEKRFRESGTLKAHMRIH 224
                    99*******************99 PP
5zf-C2H2232.1e-07230252123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C + F+++snLk+H r H
  Bathy09g04040 230 YECDVCEMKFRHSSNLKVHVRIH 252
                    99*******************99 PP
6zf-C2H216.62.2e-05258275118
                    EEETTTTEEESSHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkr 18 
                    y+C  C k+F+++snLk+
  Bathy09g04040 258 YECDVCEKRFTQSSNLKT 275
                    99**************97 PP
7zf-C2H222.82.4e-07286309123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C  C k F+++ +Lk+H rt H
  Bathy09g04040 286 YECDVCEKAFRQSGDLKSHKRTqH 309
                    99********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.601.106.9E-654108No hitNo description
SuperFamilySSF576671.51E-18117168No hitNo description
Gene3DG3DSA:3.30.160.603.8E-15117147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000961.5E-5118140IPR007087Zinc finger, C2H2
PROSITE profilePS5015714.877118145IPR007087Zinc finger, C2H2
SMARTSM003552.0E-4118140IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
PfamPF000962.3E-6146168IPR007087Zinc finger, C2H2
SMARTSM003551.5E-4146168IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.061146173IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-18148175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
SuperFamilySSF576672.29E-23155211No hitNo description
SMARTSM003551.8174196IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.877174201IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.7E-18176203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF138944.5E-4202224No hitNo description
SMARTSM003552.6E-4202224IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.041202229IPR007087Zinc finger, C2H2
PROSITE patternPS000280204224IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-17204231IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.82E-23211267No hitNo description
PROSITE profilePS5015715.376230257IPR007087Zinc finger, C2H2
SMARTSM003550.0013230252IPR015880Zinc finger, C2H2-like
PfamPF128740.022230251No hitNo description
PROSITE patternPS000280232252IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.3E-17232259IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.71E-20252304No hitNo description
PROSITE profilePS5015714.524258285IPR007087Zinc finger, C2H2
SMARTSM003552.1258280IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.6E-17260280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.604.3E-13281307IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000962.8E-5286309IPR007087Zinc finger, C2H2
SMARTSM003559.2E-4286309IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.736286309IPR007087Zinc finger, C2H2
PROSITE patternPS000280288309IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MRRKNPHPQR AVNVKTVVVG DDDEEEEGGG EEPLVLCLQI PPDEDDDDVF VVVDDDIDDD  60
EDDDDDDDDD DDDDDDDDDD DDDDDDDDDD DDDEMDEQTR KEETSFRKGS KRKRTQQHEC  120
DVCEKVFVSP SSLAIHMRIH TNERPYECEV CKKCFRQSGD LKVHMRIHTN EKPYKCDVCE  180
KRFTQASNLK TRMRIHTNEK PYECDVCEKR FRESGTLKAH MRIHTNEKPY ECDVCEMKFR  240
HSSNLKVHVR IHTNEKPYEC DVCEKRFTQS SNLKTGMRTH TNEKPYECDV CEKAFRQSGD  300
LKSHKRTQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A2e-491183074188Aart
2i13_B2e-491183074188Aart
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822700.0FO082270.1 Bathycoccus prasinos genomic : Chromosome_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007511335.10.0PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotB4DU558e-64ZN879_HUMAN; Zinc finger protein 879
SwissprotQ6ZN578e-64ZFP2_HUMAN; Zinc finger protein 2 homolog
SwissprotQ8BI999e-64ZN879_MOUSE; Zinc finger protein 879
TrEMBLK8F4A00.0K8F4A0_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007511335.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.27e-12C2H2 family protein