PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy09g03960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 340aa MW: 40533.2 Da PI: 8.6016 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.1 | 3.9e-07 | 81 | 103 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k+F +s+L +H+rtH Bathy09g03960 81 HECDVCEKVFGYSSQLAVHMRTH 103 78********************9 PP | |||||||
2 | zf-C2H2 | 25.6 | 3e-08 | 109 | 131 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C k+F++++ Lk H+r H Bathy09g03960 109 YECGVCEKRFRDSYALKIHMRIH 131 99*******************99 PP | |||||||
3 | zf-C2H2 | 23.6 | 1.3e-07 | 137 | 159 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k+F++ L++H+r H Bathy09g03960 137 YECDVCKKRFTQAGGLQTHMRIH 159 99*******************99 PP | |||||||
4 | zf-C2H2 | 13.9 | 0.00016 | 165 | 187 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C + F+++ Lk H +H Bathy09g03960 165 YECDVCEMKFRHSNALKIHKFRH 187 99*****************9988 PP | |||||||
5 | zf-C2H2 | 28.1 | 4.7e-09 | 204 | 226 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+Fs +snL++H+r H Bathy09g03960 204 YECDVCEKRFSESSNLQSHMRIH 226 99*******************99 PP | |||||||
6 | zf-C2H2 | 27.2 | 9.5e-09 | 232 | 254 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++ nL++H+r H Bathy09g03960 232 YECDVCEKRFTTSGNLTNHMRIH 254 99*******************99 PP | |||||||
7 | zf-C2H2 | 26.9 | 1.2e-08 | 260 | 282 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k F++ nLk+H+r H Bathy09g03960 260 YECDVCDKAFRQLGNLKVHMRIH 282 99*******************99 PP | |||||||
8 | zf-C2H2 | 17.7 | 9.8e-06 | 288 | 310 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C + F+++ Lk+H+r H Bathy09g03960 288 HECDVCEMKFRHSNALKTHMRIH 310 78*******************99 PP | |||||||
9 | zf-C2H2 | 18.1 | 7.3e-06 | 316 | 338 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C + F++ +L++H rtH Bathy09g03960 316 YECDVCEMKFRQYGTLQSHKRTH 338 99********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.0014 | 81 | 103 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 14.96 | 81 | 108 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.2E-8 | 81 | 98 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF00096 | 2.3E-5 | 81 | 103 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 83 | 103 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.81E-23 | 89 | 146 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-18 | 99 | 128 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 15.251 | 109 | 136 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.4E-4 | 109 | 131 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 5.8E-6 | 109 | 131 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 111 | 131 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.5E-18 | 129 | 157 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.6E-19 | 131 | 183 | No hit | No description |
SMART | SM00355 | 3.8E-5 | 137 | 159 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 15.978 | 137 | 164 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 1.5E-5 | 137 | 159 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 139 | 159 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.0E-12 | 158 | 188 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.035 | 165 | 187 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 0.025 | 165 | 183 | No hit | No description |
PROSITE profile | PS50157 | 11.094 | 165 | 203 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 167 | 187 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.15E-22 | 185 | 241 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-18 | 189 | 222 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 9.5E-5 | 204 | 226 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.207 | 204 | 231 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 2.7E-6 | 204 | 226 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 206 | 226 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.8E-18 | 223 | 250 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 16.373 | 232 | 259 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.0E-5 | 232 | 254 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 234 | 254 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.29E-23 | 241 | 297 | No hit | No description |
Pfam | PF13465 | 2.2E-10 | 246 | 270 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.3E-20 | 251 | 280 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 3.9E-5 | 260 | 282 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.311 | 260 | 287 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 262 | 282 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.8E-16 | 281 | 308 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.65E-17 | 282 | 334 | No hit | No description |
SMART | SM00355 | 0.0019 | 288 | 310 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 14.503 | 288 | 315 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 0.0032 | 289 | 310 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 290 | 310 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.4E-13 | 309 | 338 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0013 | 316 | 338 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.905 | 316 | 339 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.032 | 316 | 338 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 318 | 338 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MRRRRKNPHP KRAVNARTVL KCDILEERGG EEEEKEEQPP VLCLKIPDED EVVFEIFEQK 60 EMRKEMTTTT KGVKRKKTQQ HECDVCEKVF GYSSQLAVHM RTHTNERPYE CGVCEKRFRD 120 SYALKIHMRI HTNEKPYECD VCKKRFTQAG GLQTHMRIHT NEKPYECDVC EMKFRHSNAL 180 KIHKFRHSNA LKIHKRIHTN EKPYECDVCE KRFSESSNLQ SHMRIHTNEN PYECDVCEKR 240 FTTSGNLTNH MRIHTNEKPY ECDVCDKAFR QLGNLKVHMR IHTNEKPHEC DVCEMKFRHS 300 NALKTHMRIH TNEKPYECDV CEMKFRQYGT LQSHKRTHN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5v3j_E | 2e-60 | 81 | 339 | 4 | 284 | Zinc finger protein 568 |
5v3j_F | 2e-60 | 81 | 339 | 4 | 284 | Zinc finger protein 568 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082270 | 0.0 | FO082270.1 Bathycoccus prasinos genomic : Chromosome_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007510890.1 | 0.0 | PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein | ||||
TrEMBL | K8F308 | 0.0 | K8F308_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein) | ||||
STRING | XP_007510890.1 | 0.0 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 7e-12 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19013903 |