PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy09g03240
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 272aa    MW: 32360.6 Da    PI: 7.6924
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy09g03240genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H224.66.4e-08108130123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C k+F ++s L +H+rtH
  Bathy09g03240 108 HECDVCEKVFVTPSKLATHMRTH 130
                    78********************9 PP
2zf-C2H2262.3e-08136158123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++snLk+H r+H
  Bathy09g03240 136 YECDVCEKRFTQSSNLKVHKRVH 158
                    99*******************99 PP
3zf-C2H227.57.6e-09164186123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++ +L+rH+r H
  Bathy09g03240 164 YECDVCEKRFRDSGHLQRHMRIH 186
                    99*******************99 PP
4zf-C2H220.21.5e-06192214123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F  +  LkrH r H
  Bathy09g03240 192 YECDVCEKRFIESGALKRHVRIH 214
                    99*******************99 PP
5zf-C2H227.57.5e-09220242123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+Fsr ++Lk+H+r H
  Bathy09g03240 220 YECDVCEKRFSRADSLKTHMRIH 242
                    99*******************99 PP
6zf-C2H227.76.4e-09248271123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C  C+k F++  +L++H+rt H
  Bathy09g03240 248 YECDVCDKAFRQLAHLQKHMRTqH 271
                    99********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.46E-19107158No hitNo description
SMARTSM003553.6E-4108130IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.69108135IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.5E-15108137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000965.0E-6108130IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
SMARTSM003555.5E-4136158IPR015880Zinc finger, C2H2-like
PfamPF000964.5E-6136158IPR007087Zinc finger, C2H2
PROSITE profilePS5015716.83136163IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-18138162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
SuperFamilySSF576673.42E-24145201No hitNo description
Gene3DG3DSA:3.30.160.604.6E-16163183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015716.477164191IPR007087Zinc finger, C2H2
SMARTSM003551.6E-5164186IPR015880Zinc finger, C2H2-like
PfamPF000961.6E-6164186IPR007087Zinc finger, C2H2
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.5E-18184211IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF138948.8E-4192214No hitNo description
SMARTSM003554.6E-4192214IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015715.022192219IPR007087Zinc finger, C2H2
PROSITE patternPS000280194214IPR007087Zinc finger, C2H2
SuperFamilySSF576678.6E-24201257No hitNo description
Gene3DG3DSA:3.30.160.602.5E-19212240IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.9E-5220242IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.498220247IPR007087Zinc finger, C2H2
PfamPF000962.2E-6220242IPR007087Zinc finger, C2H2
PROSITE patternPS000280222242IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.4E-16241269IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.986248271IPR007087Zinc finger, C2H2
SMARTSM003555.1E-5248271IPR015880Zinc finger, C2H2-like
PfamPF000966.9E-7248271IPR007087Zinc finger, C2H2
PROSITE patternPS000280250271IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MRRRPRKNPR PKRAVNARTV LKGSGKEEPL VFVRSRIPDD EDVEANHQIQ KEEEEEGEEE  60
EEEGEDEDVK QLWRIMCVPC DDVVEQNHQM REEETAFIAK GVKRKRGHEC DVCEKVFVTP  120
SKLATHMRTH TKEKPYECDV CEKRFTQSSN LKVHKRVHTN EKPYECDVCE KRFRDSGHLQ  180
RHMRIHTNEK PYECDVCEKR FIESGALKRH VRIHMNEKPY ECDVCEKRFS RADSLKTHMR  240
IHTNEKPYEC DVCDKAFRQL AHLQKHMRTQ H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A1e-461082694188Aart
2i13_B1e-461082694188Aart
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
116RRRPRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822700.0FO082270.1 Bathycoccus prasinos genomic : Chromosome_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007511266.10.0PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotP100732e-55ZSC22_HUMAN; Zinc finger and SCAN domain-containing protein 22
TrEMBLK8FF460.0K8FF46_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007511266.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.22e-12C2H2 family protein