PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy09g03130
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family MYB_related
Protein Properties Length: 318aa    MW: 34508 Da    PI: 10.1589
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy09g03130genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-13232276347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
    Bathy09g03130 232 PWTEEEHRLFLLGLAKFGKGDWRSISRNFVVSRTPTQVASHAQKY 276
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.235108IPR001005SANT/Myb domain
PROSITE profilePS500904.97239106IPR017877Myb-like domain
PROSITE profilePS5129417.22225281IPR017930Myb domain
SuperFamilySSF466891.04E-16227282IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-17229279IPR006447Myb domain, plants
SMARTSM007174.4E-11229279IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-11230275IPR009057Homeodomain-like
CDDcd001672.76E-10232277No hitNo description
PfamPF002492.8E-11232276IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MATAKMKGST FPRLSSFDNL HGLPSLQNQQ QSNEFFDHWT PDEDNLFEHS LAQFESSVPL  60
SINVHAMNDL SPQNGIGAGN HINIWGQISQ MTKTPDGIRK RYNQLVDDIR AIESGRARVP  120
NNHVGGSCED MTSPWWGREF QDAQFGDTSS EPSSSDGSLN NDVQFKVPGS PSSKLTKNKK  180
NGSGNGVQKK KSSDGGGATK SSASGGTHVT AGSTGGSKQQ LTHEQERRKG IPWTEEEHRL  240
FLLGLAKFGK GDWRSISRNF VVSRTPTQVA SHAQKYFIRL NSMNKKDKRR SSIHDITEAS  300
GASGASTASG ASTQFAR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822700.0FO082270.1 Bathycoccus prasinos genomic : Chromosome_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007510911.10.0predicted protein
TrEMBLK8FEQ70.0K8FEQ7_9CHLO; Uncharacterized protein
STRINGXP_007510911.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3221529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.14e-32MYB family protein