PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy09g02470
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 471aa    MW: 52670.2 Da    PI: 6.7082
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy09g02470genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.81e-06413437123
                    EEET..TTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                    y C+  +Cgk F ++s L+rHi tH
  Bathy09g02470 413 YICTweNCGKAFVDNSKLQRHIVTH 437
                    899999****************999 PP
2zf-C2H211.80.00075445466323
                    ETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                    C  C+ sF  k nL++H+++ H
  Bathy09g02470 445 CDVCNASFGLKFNLHTHLKNvH 466
                    *******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.8383408IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280385408IPR007087Zinc finger, C2H2
SuperFamilySSF576671.24E-14394452No hitNo description
Gene3DG3DSA:3.30.160.601.5E-13406432IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.066413442IPR007087Zinc finger, C2H2
SMARTSM003559.5E-4413437IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280415437IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.2E-10433463IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.12443466IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.556443466IPR007087Zinc finger, C2H2
PROSITE patternPS000280445466IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MGLKFVIKQR PAAQDDENEN EGEESTKEEE LSNVSLLLEQ EKTNTEEDDS MMMRREEEEQ  60
EQEEQQKCTA EGVPIAFPDE YRGTSAIIIT PDGITMHRTS RGAFKCGQCK YCSQPNLKQK  120
CLYNNAVKIQ RGENAANNYN NSGVPKARSA MATSYVVPAS YANSKAAVAG AAFFDSDQKQ  180
KNKLFAPRKF APTKGKEEEE NAAVDGFIRN RGPMAAQSKY IGIIKTSTAK VVVAKNFDVS  240
KEGIAKTATR WRKEKTRVPN VDFDEEEETE KFGSDVYLWK RQKGESCERP TWTPLPETPP  300
ETSEKKEMDE DDKALLQPIL PGMDDGQRAA APRRYNFQSN TVAMAANESK DGSSDVKPLL  360
AVPVPSAGGR VYNDKVDPSL LVVACNEPGC LERFLDRPRM LRHVANAHRE KRYICTWENC  420
GKAFVDNSKL QRHIVTHTQE KTFLCDVCNA SFGLKFNLHT HLKNVHGILP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C9e-12382463585PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822700.0FO082270.1 Bathycoccus prasinos genomic : Chromosome_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007511206.10.0unnamed protein product
TrEMBLK8FF240.0K8FF24_9CHLO; Unnamed protein product
STRINGXP_007511206.10.0(Bathycoccus prasinos)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.23e-16C2H2 family protein