PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy09g00490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 483aa MW: 54652.5 Da PI: 7.9906 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6e-05 | 266 | 289 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C +C ++F+ ++L+ H r+ H Bathy09g00490 266 FSCDICAETFKKEHLLTAHVRVeH 289 89*******************988 PP | |||||||
2 | zf-C2H2 | 19.1 | 3.4e-06 | 296 | 319 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 Cp +Cgk Fsr+ +Lk+H +H Bathy09g00490 296 LCPvpKCGKEFSRRTDLKKHGLVH 319 59999***************8776 PP | |||||||
3 | zf-C2H2 | 22 | 4.3e-07 | 325 | 347 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C +C+++F ++snL++H r H Bathy09g00490 325 YACAYCDQRFISSSNLNKHERQH 347 89******************998 PP | |||||||
4 | zf-C2H2 | 12.2 | 0.00057 | 353 | 376 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C C + Fsr+ L++H + H Bathy09g00490 353 YSCRVCLRKFSRSLGLRNHVQQqH 376 99*****************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.082 | 266 | 289 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.51 | 266 | 294 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 268 | 289 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.6E-14 | 274 | 334 | No hit | No description |
SMART | SM00355 | 0.74 | 295 | 319 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.103 | 295 | 324 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.4E-11 | 295 | 318 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 297 | 319 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.4E-13 | 319 | 343 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.2E-16 | 319 | 371 | No hit | No description |
PROSITE profile | PS50157 | 14.627 | 325 | 352 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0044 | 325 | 347 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 327 | 347 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.0E-10 | 344 | 373 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.868 | 353 | 381 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.031 | 353 | 376 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 355 | 376 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MRQKSKNPKR CFVAYDFQYP GKKRSRTPPL EEEDKEERAG KNEDGCDRDE NELERRRKLS 60 KMGAEMLLLS SSVLEEENLG AVPSSDGDVE DDANKLSREE EEPPPQLKPK VEGIRQNNND 120 ADNNDNNIDD TNNTEIKLMI ALQRSILLAC TELPDAQTAT AEARNAFLQM PLMNSLALAL 180 GSDAKSSFQG VSMDKITNHD VLQCVFVAAG ECKGDKKRAT KRNTKKDAPE LVNLPTRYVG 240 PHVGEKCCRS CWYRIYRMTN TLSLPFSCDI CAETFKKEHL LTAHVRVEHE GKQAYLCPVP 300 KCGKEFSRRT DLKKHGLVHT GERPYACAYC DQRFISSSNL NKHERQHTGF KPYSCRVCLR 360 KFSRSLGLRN HVQQQHLKDT SWSSSKVAVA EEKEKEEVET ASIKRKKGKK NWGDKTTAYT 420 APIYVLRPQG ETTNLNKNIN KKAPLSESEN SLELYLNTLA KEKETKKCEN HLNDDDDDES 480 SS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 4e-23 | 238 | 382 | 21 | 190 | Aart |
2i13_B | 4e-23 | 238 | 382 | 21 | 190 | Aart |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082270 | 0.0 | FO082270.1 Bathycoccus prasinos genomic : Chromosome_9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007511068.1 | 0.0 | zinc finger protein Gfi-1 | ||||
TrEMBL | K8F2S1 | 0.0 | K8F2S1_9CHLO; Zinc finger protein Gfi-1 | ||||
STRING | XP_007511068.1 | 0.0 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 8e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19013556 |