PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy09g00300
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family MYB
Protein Properties Length: 412aa    MW: 44263.4 Da    PI: 10.4905
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy09g00300genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.9e-17246348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +WT+eEde+l ++v+++G++ W  +a++m  ++ +kqc+ rwq+yl
    Bathy09g00300  2 AWTEEEDEQLRKLVAEFGPKKWVFVASKME-NKGGKQCRRRWQNYL 46
                     7*****************************.**************7 PP
2Myb_DNA-binding41.43.4e-135494244
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     g W++eEde l + +k  G++ W+ Ia+ +g gRt++ +k+r+
    Bathy09g00300 54 GGWSPEEDEVLMREHKIVGNK-WTEIAKAVG-GRTDNAVKNRY 94
                     56*******************.*********.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.011150IPR017930Myb domain
PfamPF002497.3E-16146IPR001005SANT/Myb domain
SMARTSM007177.5E-12248IPR001005SANT/Myb domain
CDDcd001675.67E-15246No hitNo description
SuperFamilySSF466891.72E-26294IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-16247IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-1651100IPR009057Homeodomain-like
SMARTSM007172.2E-1152100IPR001005SANT/Myb domain
PROSITE profilePS5129416.04152102IPR017930Myb domain
PfamPF002491.3E-115494IPR001005SANT/Myb domain
CDDcd001676.93E-105694No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MAWTEEEDEQ LRKLVAEFGP KKWVFVASKM ENKGGKQCRR RWQNYLNCDN NKQGGWSPEE  60
DEVLMREHKI VGNKWTEIAK AVGGRTDNAV KNRYAALMTK QSGGTASGGV KKKKPPTTTM  120
PTTSPEKAEN KDNKTNKAEI KDNKTNTVAK KMMKNKDEKK APASVAKKPT GATLAKAAAA  180
HMKGGPSGVG LKKLDIKGGR GGPPGSTLSP FKGSDKWFKP SLSSLKVPSS SRFNGNGTTP  240
GILDFSPLVN TPNFNLLTGA ELELLKELNA SFSPTASEAA FGFNTLTSDK HIGSGLPNMA  300
PESPVLDMHQ VLKWIIAVTP RGDEAGTKAT PFAGVQPPPL SSKQAEFLKS SLEERLKTVH  360
DAPTGDLPPN IPAFSKDELN TLLSALGETP RTTGRNSAML SRLQNPFGRA T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-2631017104C-Myb DNA-Binding Domain
1msf_C1e-2631017104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00259DAPTransfer from AT2G02820Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822700.0FO082270.1 Bathycoccus prasinos genomic : Chromosome_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007511146.10.0predicted protein
TrEMBLK8FEZ80.0K8FEZ8_9CHLO; Uncharacterized protein
STRINGXP_007511146.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02820.18e-32myb domain protein 88