PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy07g01790
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family G2-like
Protein Properties Length: 585aa    MW: 65087.1 Da    PI: 9.7765
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy07g01790genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.53e-28270323255
        G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     rlrWtpeLH+rF++ v+ LGG + AtPk ++elm v+g+t++hvkSHLQkYRl
  Bathy07g01790 270 CRLRWTPELHARFLRSVKTLGGLDIATPKGVVELMRVQGVTIQHVKSHLQKYRL 323
                    59***************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.018266326IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-26267327IPR009057Homeodomain-like
SuperFamilySSF466898.06E-15269326IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-21271324IPR006447Myb domain, plants
PfamPF143793.3E-12537576IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MDLREVFRER HFAAQKRALQ REKRERERER KRRERERARE RTLFTDGSFS PLLFLSAITA  60
RNYPPHGRRN IPFSRVRGKQ KMFSLGNLHH EDEEEEEEPP TPMNASLWPS SNTNNNNNNK  120
IGSRENAKER SGAKKNNQNQ SNNNGMSTFD FDVDVPGDLD WLDGFLRVED DEDEEENENQ  180
NADQAWGVGK GAAWKTEAIK TTGGKSGVKR GRDVATASSA EKKKKKNAAS NDDDESGENN  240
NNNNNNGKSS TSNTNNNNNN NNNNADSDRC RLRWTPELHA RFLRSVKTLG GLDIATPKGV  300
VELMRVQGVT IQHVKSHLQK YRLQEQQMSK ATSNARSKAL SIGERSFLTS TFVGLPPIIA  360
NEEKVIAKVA SIMNNQRPGA TTSPPNATAN KNTSSSPEGT ENNTGNRNST PGGDNSDGTI  420
MLGVPPLDEE EKRRHIKAAR MAVSAKRKRD KGLRFPDEDV NTSAELAKLA AVNKKLILTN  480
DVPRDDNFEN NNDTDDEDVF TAALPHISSP LKAPMMMKSA LGGVGGGAKL PEDVSAVLLR  540
QIEMQKQLHE QLLKQRKLQT AIEEHGKYLQ KIMEESATEK TSKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-17269322154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-17269322154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-17269322154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-17269322154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12332RERERERKRR
22833ERKRRE
3431448KRRHIKAARMAVSAKRKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822720.0FO082272.1 Bathycoccus prasinos genomic : Chromosome_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007512043.10.0predicted protein
TrEMBLK8FEC50.0K8FEC5_9CHLO; Uncharacterized protein
STRINGXP_007512043.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1111645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.12e-18G2-like family protein