PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy07g01350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 184aa MW: 21838.4 Da PI: 6.8299 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 24.2 | 8.6e-08 | 76 | 98 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k+F r+s+L H+r H Bathy07g01350 76 HECDLCEKVFDRPSSLAIHMRIH 98 78*******************99 PP | |||||||
2 | zf-C2H2 | 25.2 | 4.1e-08 | 104 | 126 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k F ++ +Lk+H+r H Bathy07g01350 104 YECDVCDKAFHTSGHLKSHMRIH 126 99*******************99 PP | |||||||
3 | zf-C2H2 | 26.2 | 1.9e-08 | 132 | 154 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k+Fs+ nLk+H+r H Bathy07g01350 132 HECEVCEKRFSQAGNLKTHMRIH 154 78*******************99 PP | |||||||
4 | zf-C2H2 | 26.8 | 1.3e-08 | 160 | 183 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C C+k F+++ nLkrH r+ H Bathy07g01350 160 YECDVCDKAFRDSGNLKRHARNvH 183 99*******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.19E-19 | 75 | 126 | No hit | No description |
SMART | SM00355 | 6.0E-4 | 76 | 98 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.7E-15 | 76 | 104 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 15.085 | 76 | 103 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 7.6E-6 | 76 | 98 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 78 | 98 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.4E-5 | 104 | 126 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.415 | 104 | 131 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 4.0E-6 | 104 | 126 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.4E-15 | 105 | 122 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 106 | 126 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.77E-24 | 112 | 169 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.3E-20 | 123 | 152 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 1.0E-4 | 132 | 154 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 15.563 | 132 | 159 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 134 | 154 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13465 | 2.5E-10 | 146 | 169 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.3E-15 | 153 | 180 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 1.5E-4 | 160 | 183 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.422 | 160 | 183 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 162 | 183 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MVRQKNPHPK RAENARTAVV ASDREEREAR EFREEEEEER VLCLTIPDYD DDDEMDEQIR 60 EEEMTVRKGW KRKRGHECDL CEKVFDRPSS LAIHMRIHTN ERPYECDVCD KAFHTSGHLK 120 SHMRIHTNEK PHECEVCEKR FSQAGNLKTH MRIHTKEKPY ECDVCDKAFR DSGNLKRHAR 180 NVH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 2e-26 | 76 | 183 | 4 | 188 | Aart |
2i13_B | 2e-26 | 76 | 183 | 4 | 188 | Aart |
2m0d_A | 5e-27 | 76 | 180 | 2 | 111 | Zinc finger and BTB domain-containing protein 17 |
2m0e_A | 5e-27 | 76 | 180 | 2 | 111 | Zinc finger and BTB domain-containing protein 17 |
2m0f_A | 5e-27 | 76 | 180 | 2 | 111 | Zinc finger and BTB domain-containing protein 17 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082272 | 0.0 | FO082272.1 Bathycoccus prasinos genomic : Chromosome_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007512266.1 | 1e-133 | PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein | ||||
TrEMBL | K8FI14 | 1e-132 | K8FI14_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein) | ||||
STRING | XP_007512266.1 | 1e-132 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 1e-11 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19014625 |