PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bathy05g03660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 184aa MW: 19371.8 Da PI: 12.0949 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.5 | 1.5e-08 | 31 | 78 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwq 45 WT+ E l +v+++G+g+Wk+I ++R+ ++k++w+ Bathy05g03660 31 VWTEPEKVALTAGVAKYGPGQWKKILDDPAfgpklTNRSNVDLKDKWR 78 6***************************9999***************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-11 | 26 | 79 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.97E-13 | 27 | 83 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0023 | 28 | 83 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 6.18E-16 | 30 | 78 | No hit | No description |
PROSITE profile | PS50090 | 6.771 | 32 | 78 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 184 aa Download sequence Send to blast |
MAKRTKSARK AAKSKPSAPR QRTPARKGYK VWTEPEKVAL TAGVAKYGPG QWKKILDDPA 60 FGPKLTNRSN VDLKDKWRGA SPTPTKKTKT PVAVSKATKP SSAKKLAFTK SPPIGVRRSP 120 SKTRPSYTKT KPAPPPRRPS SARKAAKPVA AKKPSAPAKK ASSPAPAKKS APAKASSGGC 180 VIM* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00231 | DAP | Transfer from AT1G72740 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FO082274 | 0.0 | FO082274.1 Bathycoccus prasinos genomic : chromosome_5. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007513164.1 | 1e-119 | unknown | ||||
TrEMBL | K8EF12 | 1e-117 | K8EF12_9CHLO; Uncharacterized protein | ||||
STRING | XP_007513164.1 | 1e-118 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3956 | 9 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72740.1 | 4e-16 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 19015869 |