PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy05g02420
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family MYB_related
Protein Properties Length: 928aa    MW: 101016 Da    PI: 10.5492
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy05g02420genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.5e-16230274147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT+ E++++v+a k++G   W++I +++g ++t+ q++s+ qk+
    Bathy05g02420 230 RERWTEREHDRFVEALKLHGRA-WRKIEEHIG-TKTAVQIRSHAQKF 274
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.27E-15224280IPR009057Homeodomain-like
PROSITE profilePS5129420.178225279IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-7227276IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-15228277IPR006447Myb domain, plants
SMARTSM007176.3E-12229277IPR001005SANT/Myb domain
PfamPF002491.1E-12230273IPR001005SANT/Myb domain
CDDcd001677.77E-9232275No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010243Biological Processresponse to organonitrogen compound
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0043496Biological Processregulation of protein homodimerization activity
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 928 aa     Download sequence    Send to blast
MQRKVDKKKR FVWSFQIFRR DFLIQKVPLA FAPFNLRKNS RANDKRERRR QHLANARSRK  60
KEEQNVIYIP SDSNLFVMGD SSQQQQQYAL VAQMLAAQHR DQNVQNNNSA QRMMENNATA  120
QNNNANNTNT FHPQFPFVNY NLHGQPVVVN QMSQQQQQQQ YANNGKPTAN GQKSVLVGAT  180
MAPSEGHFLP QNTSASGYTL GGQQQPIPTH HTVNGQTVKV RKPYTITKQR ERWTEREHDR  240
FVEALKLHGR AWRKIEEHIG TKTAVQIRSH AQKFFAKLQK EHQKNLEADQ LSDVTRGGGT  300
TEDGATATRD TQTSGEGGLT QTTTENIKDA DTAKKISGNN NSKLLIQALM GKKSKSEVTG  360
NTKEEDEAEL LSNLAASGDK PATVKRTSSM STGGKTTASD IPPARPKRKP SHPYPRKQSS  420
LTEIQVRGVL PVGFVNVNNK KKGHSINNSL IDVANVEQHA SASAAQALMN ATSEMVRNRM  480
IQEMQMQHLL QQQQQQRQNN KNGNNNDTTA NPLLAHLAMQ QEVPNPLSQL HALMAANPMF  540
TAMNFGGGLP GMPNMAAVAA NSNGGSFIPS FATMNNNNNN NNAKLTTTTT TTDANNNKSG  600
TEEAKPTTTT TTDKTKNSEV SEDAKASLKP NSQSAFSGYV RPTTTTTTTN SNQYRQTGSA  660
ATTTTTANNI NNSSNNNNDS AVMAAVQQHQ QMQYWNAQMA ALAAMQDPNS FAQFLQHQQM  720
GNMAMAQQQR QQQNNIAYAA GVKSEAAAAT QEKNAAGEVK TARKAQAATQ TPAEATDAGK  780
TAKMIAASRK PNAPQVPKEI ELAVANKEKS PDSDKATEEE ENKNADNSNK DTITNTTTTT  840
TTTTTGRRSR RAAAVVAAEK VTKQVSGGRA TRRSNNGGSG SGSGSGSRNQ NQPGGNKNQG  900
SSGSDGSDDV AQKGFETTSF RVYQQEE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822740.0FO082274.1 Bathycoccus prasinos genomic : chromosome_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007513081.10.0putative At5g37260-like protein
TrEMBLK8EF720.0K8EF72_9CHLO; Putative At5g37260-like protein
STRINGXP_007513081.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4541427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.12e-31MYB_related family protein