PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy05g01260
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family MYB_related
Protein Properties Length: 387aa    MW: 42359.1 Da    PI: 10.1993
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy05g01260genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.9e-074341747
                     HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwqky 47
                     + lG+g+W+ I+r++ ++Rt+ q+ s+ qky
    Bathy05g01260  4 NSLGKGDWRGISRHFVQTRTPTQVASHAQKY 34
                     679***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.565139IPR017930Myb domain
SuperFamilySSF466891.27E-8240IPR009057Homeodomain-like
CDDcd001670.00631235No hitNo description
TIGRFAMsTIGR015579.2E-8338IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGLNSLGKGD WRGISRHFVQ TRTPTQVASH AQKYFIRQQN TQKRKRRASL FDIQQGHGDG  60
ATTFVAQQMS GGSQNGGSDA TIATAALAKG SKGSNNNATS SSLTKMLKNN GNTKGSQNDK  120
LNSREEESMR TLADMVLTHD ARQQKNDTTK QQRQQKQNDS AILQQQQQQQ QHQRFLQEQK  180
EYANGHPIAG QFYGAQSPPQ TIPMTSPYYY NPMFAPTHSF VPPHAASPTE MSMFPPMDPS  240
QQQQNMNDWM AQMQRNSVAY QQQQQMAMAS AMAAGIHPSM WTAQYNMLLS GQNPAVMGIL  300
RPSSQSAETQ STAETKEKIK GGGPDAARMK VSDSFTSYQG RDSPVDAAGL YRPVAGYPSR  360
TEWLGATPLP QKSIPVPAST NAAVEP*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822740.0FO082274.1 Bathycoccus prasinos genomic : chromosome_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007513236.10.0predicted protein
TrEMBLK8EFM50.0K8EFM5_9CHLO; Uncharacterized protein
STRINGXP_007513236.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3221529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.15e-23MYB_related family protein