PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy04g03240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 152aa MW: 17752 Da PI: 6.8877 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 23.8 | 1.2e-07 | 72 | 94 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k+F ++s L H+r+H Bathy04g03240 72 HECDVCEKVFVSPSKLAIHMRMH 94 78********************9 PP | |||||||
2 | zf-C2H2 | 26.2 | 2e-08 | 100 | 122 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k F+ ++nLk+H r+H Bathy04g03240 100 YECDVCDKAFRESENLKVHVRMH 122 99********************9 PP | |||||||
3 | zf-C2H2 | 27.3 | 8.7e-09 | 128 | 151 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C C k+Fs++snL++H r+ H Bathy04g03240 128 YECDVCEKRFSQSSNLQNHARNvH 151 99*******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.68E-11 | 69 | 103 | No hit | No description |
SMART | SM00355 | 4.2E-4 | 72 | 94 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 9.2E-6 | 72 | 94 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.8E-15 | 72 | 101 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 14.378 | 72 | 99 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 74 | 94 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.57E-21 | 94 | 146 | No hit | No description |
SMART | SM00355 | 5.4E-4 | 100 | 122 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 5.1E-6 | 100 | 122 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 16.145 | 100 | 127 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.8E-17 | 102 | 121 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 102 | 122 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.6E-15 | 122 | 148 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 5.0E-4 | 128 | 151 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 4.4E-6 | 128 | 151 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 13.526 | 128 | 151 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 130 | 151 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MVFLSFHTTH KDRHKQKEVG EEEGDDDDVE RLRRILTCVP CEDDVVTKQN HQMREEETAC 60 IAKGVSLRKR GHECDVCEKV FVSPSKLAIH MRMHTKEKPY ECDVCDKAFR ESENLKVHVR 120 MHTNEKPYEC DVCEKRFSQS SNLQNHARNV H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2lvr_A | 1e-21 | 74 | 149 | 6 | 81 | Zinc finger and BTB domain-containing protein 17 |
2lvt_A | 1e-21 | 74 | 149 | 6 | 81 | Zinc finger and BTB domain-containing protein 17 |
2lvu_A | 1e-21 | 74 | 149 | 6 | 81 | Zinc finger and BTB domain-containing protein 17 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082275 | 0.0 | FO082275.1 Bathycoccus prasinos genomic : Chromosome_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007513700.1 | 1e-108 | PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein | ||||
Swissprot | Q8NB50 | 2e-23 | ZFP62_HUMAN; Zinc finger protein 62 homolog | ||||
TrEMBL | K8EUS3 | 1e-107 | K8EUS3_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein) | ||||
STRING | XP_007513700.1 | 1e-108 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 2e-08 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19016350 |