PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bathy04g02810

Organism

Bathycoccus prasinos

Taxonomic ID

41875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus

Family

C2H2

Protein Properties

Length: 263aa MW: 30988.4 Da PI: 8.6011

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bathy04g02810	genome	ORCAE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	26.3	1.8e-08	99	121	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cgk+F r+s L HirtH Bathy04g02810 99 HECDVCGKMFDRPSKLAIHIRTH 121 78********************9 PP
2	zf-C2H2	28.3	4.3e-09	127	149	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+r+ +LkrH+r H Bathy04g02810 127 YECDVCEKRFTRSGSLKRHMRIH 149 99*******************99 PP
3	zf-C2H2	27.1	1.1e-08	155	177	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+Fsr + L++H+r H Bathy04g02810 155 YECDVCWKRFSRADALQSHMRIH 177 99*******************99 PP
4	zf-C2H2	23.2	1.8e-07	183	205	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C + F+++ nLk+H+r H Bathy04g02810 183 YECDVCEMKFRHSNNLKVHMRIH 205 99*******************99 PP
5	zf-C2H2	23.1	1.9e-07	211	233	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C k+F+++s+Lk+H H Bathy04g02810 211 YECEVCEKRFRQSSHLKVHKLIH 233 99*****************9988 PP
6	zf-C2H2	25.5	3.3e-08	239	262	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C C+k F+++ +LkrH rt H Bathy04g02810 239 YECDVCDKAFRQSGHLKRHKRTqH 262 99********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00096	3.5E-6	99	121	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0014	99	121	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	15.251	99	126	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	9.6E-15	99	128	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	101	121	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.31E-23	108	164	No hit	No description
Pfam	PF00096	8.0E-7	127	149	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	16.851	127	154	IPR007087	Zinc finger, C2H2
SMART	SM00355	1.4E-5	127	149	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	129	149	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.1E-18	129	148	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Gene3D	G3DSA:3.30.160.60	5.4E-19	149	181	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.53E-10	154	186	No hit	No description
Pfam	PF00096	3.0E-6	155	177	IPR007087	Zinc finger, C2H2
SMART	SM00355	4.3E-5	155	177	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	15.417	155	182	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	157	177	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.7E-16	182	212	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF00096	1.7E-5	183	205	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	14.939	183	210	IPR007087	Zinc finger, C2H2
SMART	SM00355	3.6E-4	183	205	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	185	205	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.93E-23	192	246	No hit	No description
PROSITE profile	PS50157	16.29	211	238	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0064	211	233	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	213	233	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.6E-18	213	239	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF00096	4.4E-6	239	262	IPR007087	Zinc finger, C2H2
SMART	SM00355	2.7E-4	239	262	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	13.318	239	262	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	8.5E-14	240	260	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	241	262	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MRTVVVNLLL PSKVSYTNKY NTVRRKSPHP KRAVNARTVL KVAREEEEPL VLCLRIPDEE 60 DGLEANHLQI QKEEEEEEGV EEGEEEITVR EGAKRKIGHE CDVCGKMFDR PSKLAIHIRT 120 HTKEKPYECD VCEKRFTRSG SLKRHMRIHT NEKPYECDVC WKRFSRADAL QSHMRIHANE 180 KPYECDVCEM KFRHSNNLKV HMRIHANEKP YECEVCEKRF RQSSHLKVHK LIHTGEKPYE 240 CDVCDKAFRQ SGHLKRHKRT QH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2i13_A	5e-46	99	260	4	188	Aart
2i13_B	5e-46	99	260	4	188	Aart
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Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO082275	0.0	FO082275.1 Bathycoccus prasinos genomic : Chromosome_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007513428.1	0.0	PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
TrEMBL	K8F366	0.0	K8F366_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRING	XP_007513428.1	0.0	(Bathycoccus prasinos)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP70	6	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	8e-14	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	19016307