PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy04g02730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 217aa MW: 25627 Da PI: 8.267 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 25.4 | 3.5e-08 | 81 | 103 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k+F ++s L rH+r H Bathy04g02730 81 HECDVCEKVFVTPSKLARHMRIH 103 78*******************99 PP | |||||||
2 | zf-C2H2 | 27.3 | 9e-09 | 109 | 131 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++ +Lk+H+rtH Bathy04g02730 109 YECDVCEKRFTQSGDLKTHMRTH 131 99********************9 PP | |||||||
3 | zf-C2H2 | 28 | 5.4e-09 | 137 | 159 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++s+Lk+H+r H Bathy04g02730 137 YECDVCEKRFTQSSSLKSHMRIH 159 99*******************99 PP | |||||||
4 | zf-C2H2 | 26.7 | 1.4e-08 | 165 | 187 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+r+ +L++H+r H Bathy04g02730 165 YECDVCEKRFRRSGDLQTHMRIH 187 99*******************98 PP | |||||||
5 | zf-C2H2 | 28.2 | 4.4e-09 | 193 | 216 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C C k+Fs++snLk+H+r+ H Bathy04g02730 193 YECDECEKRFSQSSNLKTHMRNfH 216 99*******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.05E-19 | 80 | 131 | No hit | No description |
SMART | SM00355 | 1.4E-4 | 81 | 103 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.4E-16 | 81 | 109 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 15.272 | 81 | 108 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 2.6E-6 | 81 | 103 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 83 | 103 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.2E-5 | 109 | 131 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.186 | 109 | 136 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 1.1E-6 | 109 | 131 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.8E-16 | 110 | 128 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 111 | 131 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.63E-25 | 118 | 174 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-20 | 129 | 156 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 5.8E-5 | 137 | 159 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.934 | 137 | 164 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 7.3E-7 | 137 | 159 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 139 | 159 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.7E-19 | 157 | 184 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.01E-21 | 159 | 211 | No hit | No description |
SMART | SM00355 | 3.1E-5 | 165 | 187 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 15.958 | 165 | 192 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 1.7E-6 | 165 | 187 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 167 | 189 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.9E-17 | 185 | 213 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 5.3E-4 | 193 | 216 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 14.025 | 193 | 216 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 1.1E-6 | 193 | 216 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 195 | 216 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MTGSSRRKNK HPKRAENVKT VVVVRKGGDR EEEGDDDDDV ERLRRMLMCV PCDDDVVEQN 60 HQMREEETAC IAKGVKRKRG HECDVCEKVF VTPSKLARHM RIHTNEKPYE CDVCEKRFTQ 120 SGDLKTHMRT HTKEKPYECD VCEKRFTQSS SLKSHMRIHT NEKPYECDVC EKRFRRSGDL 180 QTHMRIHTHE KPYECDECEK RFSQSSNLKT HMRNFH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 6e-41 | 40 | 214 | 15 | 188 | Aart |
2i13_B | 6e-41 | 40 | 214 | 15 | 188 | Aart |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082275 | 0.0 | FO082275.1 Bathycoccus prasinos genomic : Chromosome_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007513685.1 | 1e-158 | PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein | ||||
TrEMBL | K8EUR1 | 1e-157 | K8EUR1_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein) | ||||
STRING | XP_007513685.1 | 1e-158 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 6e-13 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19016298 |