PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy04g02570
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 266aa    MW: 31354.6 Da    PI: 8.4544
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy04g02570genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H227.11e-087496123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C  C k+F ++s+L rH+rtH
  Bathy04g02570 74 HECDVCEKMFVTPSDLARHMRTH 96
                   78********************9 PP
2zf-C2H228.73.1e-09102124123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C+k F+++s L++H+r H
  Bathy04g02570 102 YECDVCDKAFRDSSALTKHMRIH 124
                    99*******************99 PP
3zf-C2H2232.1e-07130152123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C ++F+ + +Lk+H+r H
  Bathy04g02570 130 YECDVCERCFRESGTLKKHMRIH 152
                    99*******************99 PP
4zf-C2H225.53.3e-08158180123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+Fs++ +L++H+r H
  Bathy04g02570 158 YECDVCEKRFSDSGTLTTHMRIH 180
                    99*******************99 PP
5zf-C2H230.39.9e-10186208123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C+k F+++s LkrH+rtH
  Bathy04g02570 186 YECDVCDKAFRTSSGLKRHMRTH 208
                    99********************9 PP
6zf-C2H224.75.7e-08214236123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F++  +Lk+H+r H
  Bathy04g02570 214 YECDVCEKRFTQAGTLKTHMRIH 236
                    99*******************99 PP
7zf-C2H225.82.7e-08242264123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C+ C ++F+++ nL+rH rtH
  Bathy04g02570 242 YECEVCEERFTTSGNLQRHVRTH 264
                    99********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.18E-2073124No hitNo description
Gene3DG3DSA:3.30.160.606.3E-1574103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.3E-47496IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015715.18974101IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
PfamPF134652.5E-1088111IPR007087Zinc finger, C2H2
SMARTSM003552.0E-5102124IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015715.48102129IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-17104131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
SuperFamilySSF576671.64E-21110167No hitNo description
PfamPF138940.0011130152No hitNo description
SMARTSM003556.2E-4130152IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.041130157IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-15132159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
SMARTSM003559.0E-5158180IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.145158185IPR007087Zinc finger, C2H2
PfamPF000968.8E-6158180IPR007087Zinc finger, C2H2
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-17160179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.24E-24167223No hitNo description
Gene3DG3DSA:3.30.160.604.5E-19180204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.2E-5186208IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.706186213IPR007087Zinc finger, C2H2
PROSITE patternPS000280188208IPR007087Zinc finger, C2H2
PfamPF134651.7E-10200224IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-19205234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.09E-20208260No hitNo description
SMARTSM003555.1E-5214236IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015716.29214241IPR007087Zinc finger, C2H2
PROSITE patternPS000280216236IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-16235264IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF138944.0E-6242265No hitNo description
SMARTSM003555.7E-5242264IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.508242265IPR007087Zinc finger, C2H2
PROSITE patternPS000280244265IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MRKKNPHPQR AVNARTVLKC DFREEKGGEE EGDVERLRRM LACVPCRDVV KEQNQKREEE  60
TTFVARGVKR KRGHECDVCE KMFVTPSDLA RHMRTHTNER PYECDVCDKA FRDSSALTKH  120
MRIHSNEKAY ECDVCERCFR ESGTLKKHMR IHTNEKPYEC DVCEKRFSDS GTLTTHMRIH  180
TNEKPYECDV CDKAFRTSSG LKRHMRTHTK EKPYECDVCE KRFTQAGTLK THMRIHTNEK  240
PYECEVCEER FTTSGNLQRH VRTHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5v3m_C2e-47742645310Zinc finger protein 568
5wjq_D1e-47742645285Zinc finger protein 568
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822750.0FO082275.1 Bathycoccus prasinos genomic : Chromosome_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007513473.10.0PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotP170362e-66ZNF3_HUMAN; Zinc finger protein 3
TrEMBLK8F3980.0K8F398_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007513473.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.23e-13C2H2 family protein