PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bathy04g02370

Organism

Bathycoccus prasinos

Taxonomic ID

41875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus

Family

C2H2

Protein Properties

Length: 278aa MW: 33132.1 Da PI: 7.1623

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bathy04g02370	genome	ORCAE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	26.1	2.2e-08	86	108	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k+F+ +s+L rH+rtH Bathy04g02370 86 HECDVCEKVFRYPSYLARHMRTH 108 78********************9 PP
2	zf-C2H2	20.3	1.5e-06	114	136	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C ++F+ +++Lk H+r H Bathy04g02370 114 YECDVCEERFRESHHLKDHMRIH 136 99*******************99 PP
3	zf-C2H2	18.1	7.3e-06	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k+Fs++ Lk H r H Bathy04g02370 142 YECDVCKKRFSHSNGLKYHTRIH 164 99*******************99 PP
4	zf-C2H2	25.3	3.9e-08	170	192	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F+++ +L++H+r H Bathy04g02370 170 YECDFCDRAFRDSGSLTKHMRIH 192 99*******************99 PP
5	zf-C2H2	22.4	3.2e-07	198	220	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C ++Fs + Lk+H+r H Bathy04g02370 198 YECDVCERCFSESTALKTHMRIH 220 99*******************99 PP
6	zf-C2H2	24.3	7.9e-08	226	248	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C ++Fs + +LkrH+r H Bathy04g02370 226 YECDVCERCFSESGSLKRHMRIH 248 99*******************99 PP
7	zf-C2H2	25.7	2.8e-08	254	277	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C C+k F++ nLkrH rt H Bathy04g02370 254 YECDVCDKAFRQLGNLKRHKRTqH 277 99********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.17E-17	85	136	No hit	No description
SMART	SM00355	4.6E-4	86	108	IPR015880	Zinc finger, C2H2-like
Pfam	PF00096	2.7E-6	86	108	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.0E-15	86	115	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	15.313	86	113	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	88	108	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0033	114	136	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	15.355	114	141	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.6E-16	116	143	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	116	136	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.94E-21	123	179	No hit	No description
Pfam	PF12874	0.017	142	163	No hit	No description
SMART	SM00355	0.0038	142	164	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	15.771	142	169	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	144	164	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	8.3E-15	144	163	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Gene3D	G3DSA:3.30.160.60	9.2E-17	164	189	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	16.373	170	197	IPR007087	Zinc finger, C2H2
SMART	SM00355	3.3E-5	170	192	IPR015880	Zinc finger, C2H2-like
Pfam	PF00096	3.0E-6	170	192	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	172	192	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.92E-22	178	235	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.0E-18	190	218	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13894	6.3E-4	198	220	No hit	No description
SMART	SM00355	6.6E-4	198	220	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	16.145	198	225	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	200	220	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.2E-17	219	244	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.39E-21	220	272	No hit	No description
SMART	SM00355	1.7E-4	226	248	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	16.415	226	253	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	228	248	IPR007087	Zinc finger, C2H2
Pfam	PF13465	3.5E-11	240	264	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	8.3E-17	245	275	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	1.5E-4	254	277	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.923	254	277	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	256	277	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MGRRKNPHPK RAVNARTVLK VVKGRTEEEG EEGEEPLVLC SRIPEEDDFE ANHHQIQKEE 60 EEEEEGVEEE EEEITVRKGA KRKRGHECDV CEKVFRYPSY LARHMRTHTN EKPYECDVCE 120 ERFRESHHLK DHMRIHTKEK PYECDVCKKR FSHSNGLKYH TRIHTNEKPY ECDFCDRAFR 180 DSGSLTKHMR IHTNEKPYEC DVCERCFSES TALKTHMRIH TNEKPYECDV CERCFSESGS 240 LKRHMRIHTN EKPYECDVCD KAFRQLGNLK RHKRTQH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2i13_A	7e-47	86	275	5	188	Aart
2i13_B	7e-47	86	275	5	188	Aart
5v3m_C	2e-45	74	275	5	312	Zinc finger protein 568
5wjq_D	1e-45	74	275	5	287	Zinc finger protein 568
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO082275	0.0	FO082275.1 Bathycoccus prasinos genomic : Chromosome_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007513815.1	0.0	PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
Swissprot	Q96ND8	5e-65	ZN583_HUMAN; Zinc finger protein 583
TrEMBL	K8EV50	0.0	K8EV50_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRING	XP_007513815.1	0.0	(Bathycoccus prasinos)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP70	6	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	1e-09	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	19016262