PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy04g01800
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 1562aa    MW: 173905 Da    PI: 4.8611
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy04g01800genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.99.8e-07110132123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C k+F+ + +L rH+r H
  Bathy04g01800 110 HECDVCEKMFRAPTDLARHMRIH 132
                    78*******************99 PP
2zf-C2H221.56e-07138160123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC  C k+F+++ +Lk+H+r H
  Bathy04g01800 138 YKCDVCEKRFRHSGSLKTHMRIH 160
                    9********************99 PP
3zf-C2H224.47.4e-08166188123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++ +Lk+H+rtH
  Bathy04g01800 166 YECDVCEKRFTQSGSLKKHMRTH 188
                    99********************9 PP
4zf-C2H223.31.6e-07194216123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C+k F+++  Lk+H+r H
  Bathy04g01800 194 YECDVCDKAFTQSGALKTHMRIH 216
                    99*******************99 PP
5zf-C2H224.75.9e-08222244123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC  C k+F+r+ +Lk+H+r H
  Bathy04g01800 222 YKCDVCEKRFTRSGSLKSHMRIH 244
                    9********************99 PP
6zf-C2H220.61.2e-06250272123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC  C k+F+++  L+ H+r H
  Bathy04g01800 250 YKCDVCEKRFTQSGALQGHMRIH 272
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.02E-17109160No hitNo description
Gene3DG3DSA:3.30.160.601.5E-14110139IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.8E-4110132IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015715.147110137IPR007087Zinc finger, C2H2
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
PfamPF128740.0041138160No hitNo description
PROSITE profilePS5015716.186138165IPR007087Zinc finger, C2H2
SMARTSM003555.3E-5138160IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-16140167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.75E-23147203No hitNo description
PROSITE profilePS5015716.456166193IPR007087Zinc finger, C2H2
PfamPF000967.7E-6166188IPR007087Zinc finger, C2H2
SMARTSM003552.4E-5166188IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280168188IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.6E-17168187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.601.3E-18188214IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015716.643194221IPR007087Zinc finger, C2H2
PfamPF000961.2E-5194216IPR007087Zinc finger, C2H2
SMARTSM003552.6E-5194216IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280196216IPR007087Zinc finger, C2H2
SuperFamilySSF576671.49E-23202259No hitNo description
Gene3DG3DSA:3.30.160.603.6E-19215242IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015716.56222249IPR007087Zinc finger, C2H2
PfamPF000968.3E-6222244IPR007087Zinc finger, C2H2
SMARTSM003552.1E-5222244IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280224244IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-17243269IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.99E-17244290No hitNo description
PfamPF138940.0011250272No hitNo description
PROSITE profilePS5015716.02250277IPR007087Zinc finger, C2H2
SMARTSM003553.9E-5250272IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280252272IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.9E-8270287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355280278303IPR015880Zinc finger, C2H2-like
SuperFamilySSF483711.32E-72359556IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.102.5E-673601024IPR011989Armadillo-like helical
PROSITE profilePS5016610.029409454IPR001494Importin-beta, N-terminal domain
PfamPF038101.3E-4412454IPR001494Importin-beta, N-terminal domain
SuperFamilySSF483711.32E-725911057IPR016024Armadillo-type fold
SuperFamilySSF483713.11E-1310031054IPR016024Armadillo-type fold
SuperFamilySSF483713.11E-1310861247IPR016024Armadillo-type fold
SuperFamilySSF483711.32E-7211061166IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.102.6E-511101286IPR011989Armadillo-like helical
Gene3DG3DSA:1.25.10.108.7E-913051424IPR011989Armadillo-like helical
SuperFamilySSF483713.11E-1313121432IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.108.7E-914571513IPR011989Armadillo-like helical
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006886Biological Processintracellular protein transport
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0003676Molecular Functionnucleic acid binding
GO:0008536Molecular FunctionRan GTPase binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1562 aa     Download sequence    Send to blast
MYASKERRTR RKNEHPQRAM HAKTVVTSDR EEREREEERR RRRQREQQAL LMVWCDVERE  60
REREEEEEEE EDEDDDEDED DDEEDDEEDH DDDDDEEMTV RKGAKRKRGH ECDVCEKMFR  120
APTDLARHMR IHTNEKPYKC DVCEKRFRHS GSLKTHMRIH TNERPYECDV CEKRFTQSGS  180
LKKHMRTHTK EKPYECDVCD KAFTQSGALK THMRIHTNER PYKCDVCEKR FTRSGSLKSH  240
MRIHTNEKPY KCDVCEKRFT QSGALQGHMR IHTNEKPYKC DVCENSFMLV KLYARRMRFT  300
SSHFASLKVL ISPHSRHLHA HTQSTLCCDF RETMPPHHPF GKKKRKDSLT SSGHPLISPS  360
ELAECFRNTL STDASVREAA ERSVKTFTIK NQSSCAHFCH LACTGGEGED NNDSVAVRMA  420
AALALKKRVS IAWVKLSAEE KKHVQTLLLT GLAQEHQRAV REALSQSIAR IAQICIPGDS  480
WPEVLENLSQ MSVSAEPRHR EGAVGCFSAL AETVVRVAPV HFRTLADIFI RSLMDQEKYV  540
RKKAIEGLRA LVGEAPFIGE VVVVEKGSQT QTTGRDGKTN KKEIEQQKMV VRETVLGIVE  600
AAAHFCVSSA QSADSVDHAL LAFDVFDELF SCGESNIVKA VAADIVNVCC ECAKANGVDN  660
VVKLRALDVL SVVAERRPKS LRRANLVEPM LRAILPLLGE PDEDEDDQDK DLDKSDSEDE  720
DDNQSMRLAA ARVVDTLALA LPAKFVLHVV LDFASNNIKS PDERLRRASV GAVGVVCEGC  780
AEALSNDPVI CENLLDQLGV SLEDVSFGVR RAAAFALGQF AEFCRSSVPK MHAIALPRLF  840
QAVKKKAEAQ KEDAIARQNA FFAVEAWTSE LESGEIAAYV PLVLEVLFEA LDDGTNEQQN  900
QPFSWSVYRR KECALAIATS AATDASDTFA PFLADLLPRL ESVVSAHVRD ENDAIDQKKL  960
RLRACAIRLL GAIVEGETCR AALGNQAIEA LVQNVASGFA LTSCDAREAA HDFFASFANG  1020
CKSADENAKE TANGNEHFSQ FLNPLVEKAL ESITLDDGIM FGKDFEDFVA DNPEHDDEYE  1080
DEYDEYDEDD DDEDESNAKG YDDVRSGLVE EKIAAIRAIK SYAESAPRTY VQSQAAFEKS  1140
VEVLLQTVDY LDDEVRSFTY DSISALAGGE CLVVLCEHNP IAAKTLAEKT LEACLDAAMH  1200
DFEKNVVASS LCCAAEILKS AKKCNQPIFE NKPPHLNRLN EICLSLLRGD AMCQQSFDSD  1260
DEDEYEDGDD EDDDFGANDN ESNRARRHHN TKGKPNGAHG GNLETNEDEE EAESSLVLLE  1320
AVAEALPALA TVVGAQPFAS EFEPHFQAIL KRAHPSRSGA ERFAIYGLLA DIVESVESYA  1380
SPCAPALLPT LLEEMRSMSS PEATRNAAYL AGLLVETARR EDKSNANPYC DDETVKAIAE  1440
AAVVGAQSDA FLITHDHVGR WAKLMATRDN LAGCAARCAK SLLNRNESRE IAKAILHAVP  1500
MGEDVDEGEV VVDVVKAFIL SDDPIKSDDS SNSACDEVLR MDALRRVELH AAAMKAKKKD  1560
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A1e-4711228718188Aart
2i13_B1e-4711228718188Aart
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13241REREEERRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822750.0FO082275.1 Bathycoccus prasinos genomic : Chromosome_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007513533.10.0PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
TrEMBLK8F3E70.0K8F3E7_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007513533.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.21e-13C2H2 family protein