PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy04g01670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 228aa MW: 27561.8 Da PI: 6.509 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 27.5 | 7.5e-09 | 93 | 115 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k+F+++s+L +H+rtH Bathy04g01670 93 HECGVCEKVFTSPSLLATHMRTH 115 78********************9 PP | |||||||
2 | zf-C2H2 | 25.8 | 2.7e-08 | 121 | 143 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++ +Lk+H+r H Bathy04g01670 121 YECDVCEKRFTQSGSLKTHMRIH 143 99*******************99 PP | |||||||
3 | zf-C2H2 | 24.7 | 5.9e-08 | 148 | 170 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k+F+ nLk+H+r H Bathy04g01670 148 FECDVCQKRFTLAGNLKVHMRIH 170 89*******************99 PP | |||||||
4 | zf-C2H2 | 23.6 | 1.3e-07 | 176 | 198 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++ +Lk+H r H Bathy04g01670 176 YECDVCEKRFRTSGHLKSHKRIH 198 99*******************99 PP | |||||||
5 | zf-C2H2 | 22.2 | 3.6e-07 | 204 | 227 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C C k+F+++ +Lk H r H Bathy04g01670 204 YECDVCEKRFRTSGQLKIHVRIqH 227 99*******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-12 | 91 | 115 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.77E-19 | 92 | 143 | No hit | No description |
PROSITE profile | PS50157 | 14.482 | 93 | 120 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 7.8E-4 | 93 | 115 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 8.7E-7 | 93 | 115 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 95 | 115 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.9E-19 | 116 | 146 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 4.3E-5 | 121 | 143 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 3.7E-6 | 121 | 143 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 14.087 | 121 | 148 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 123 | 143 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.27E-20 | 130 | 185 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.1E-16 | 148 | 176 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 15.604 | 148 | 175 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.3E-4 | 148 | 170 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 2.1E-5 | 148 | 170 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 150 | 170 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.43E-20 | 170 | 222 | No hit | No description |
PROSITE profile | PS50157 | 16.124 | 176 | 203 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 0.001 | 176 | 197 | No hit | No description |
SMART | SM00355 | 4.4E-4 | 176 | 198 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.0E-14 | 177 | 194 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 178 | 198 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.5E-15 | 195 | 225 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13894 | 5.7E-4 | 204 | 227 | No hit | No description |
SMART | SM00355 | 2.8E-4 | 204 | 227 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.801 | 204 | 227 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 206 | 227 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MRRKNEHPQR AMHAKTMVTS DREEREREEE RRRRRQREQQ ALLMVWCDVE REREREEEEE 60 EEEEEDDDED EDDDEEDDEE MTVRKGAKRK RGHECGVCEK VFTSPSLLAT HMRTHTKEKP 120 YECDVCEKRF TQSGSLKTHM RIHTNEMFEC DVCQKRFTLA GNLKVHMRIH TNEKPYECDV 180 CEKRFRTSGH LKSHKRIHTN EKPYECDVCE KRFRTSGQLK IHVRIQH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 1e-31 | 93 | 225 | 22 | 188 | Aart |
2i13_B | 1e-31 | 93 | 225 | 22 | 188 | Aart |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 33 | REREEERRRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082275 | 0.0 | FO082275.1 Bathycoccus prasinos genomic : Chromosome_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007513531.1 | 1e-164 | unnamed protein product | ||||
Swissprot | Q61116 | 7e-40 | ZN235_MOUSE; Zinc finger protein 235 | ||||
TrEMBL | K8EDH4 | 1e-162 | K8EDH4_9CHLO; Unnamed protein product | ||||
STRING | XP_007513531.1 | 1e-163 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 7e-11 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19016192 |