PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy04g01230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 202aa MW: 24060.2 Da PI: 8.9758 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 27.4 | 8.2e-09 | 10 | 32 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C ksF+r+++Lk+H r H Bathy04g01230 10 YECGVCEKSFRRSDDLKKHTRIH 32 99*******************99 PP | |||||||
2 | zf-C2H2 | 28.2 | 4.6e-09 | 38 | 60 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+Fsr + L++H+r H Bathy04g01230 38 YECDVCEKRFSRADALQSHMRIH 60 99*******************99 PP | |||||||
3 | zf-C2H2 | 29.1 | 2.3e-09 | 66 | 88 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k F+++s+Lk+H+r H Bathy04g01230 66 YECDVCDKAFRHSSSLKVHMRIH 88 99*******************99 PP | |||||||
4 | zf-C2H2 | 24.2 | 8.8e-08 | 94 | 116 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++ Lk H+r H Bathy04g01230 94 YECDVCEKRFTQSGALKYHMRIH 116 99*******************99 PP | |||||||
5 | zf-C2H2 | 23.9 | 1.1e-07 | 122 | 144 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++ +L++H rtH Bathy04g01230 122 YECDVCEKRFRTSGSLTQHKRTH 144 99********************9 PP | |||||||
6 | zf-C2H2 | 29.3 | 2e-09 | 150 | 172 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C k+F++++nLk+H+rtH Bathy04g01230 150 YKCDVCEKRFRTSDNLKTHMRTH 172 9*********************9 PP | |||||||
7 | zf-C2H2 | 20.4 | 1.3e-06 | 178 | 200 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C +Fs+ nL++H r H Bathy04g01230 178 YKCVVCEARFSQLGNLQSHVRIH 200 9*********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.6E-20 | 4 | 56 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.2E-16 | 7 | 31 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 16.29 | 10 | 37 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 9.7E-4 | 10 | 32 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 1.0E-6 | 10 | 32 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 12 | 32 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.7E-19 | 32 | 58 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 15.771 | 38 | 65 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.9E-5 | 38 | 60 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 1.5E-6 | 38 | 60 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 40 | 60 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.49E-24 | 47 | 103 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.0E-18 | 59 | 84 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 16.914 | 66 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.3E-5 | 66 | 88 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 3.1E-7 | 66 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.0E-20 | 85 | 114 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 5.0E-5 | 94 | 116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.186 | 94 | 121 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.3E-24 | 103 | 159 | No hit | No description |
Pfam | PF13465 | 2.6E-10 | 108 | 133 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.7E-17 | 115 | 141 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 16.103 | 122 | 149 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.2E-4 | 122 | 144 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 124 | 144 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.0E-19 | 142 | 170 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.2E-20 | 144 | 196 | No hit | No description |
Pfam | PF13912 | 2.7E-7 | 150 | 172 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.8E-5 | 150 | 172 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.29 | 150 | 177 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 152 | 172 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.7E-16 | 171 | 200 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.219 | 178 | 201 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13894 | 3.4E-4 | 178 | 201 | No hit | No description |
SMART | SM00355 | 0.0015 | 178 | 200 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 180 | 201 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MRTHTNERPY ECGVCEKSFR RSDDLKKHTR IHTNEKPYEC DVCEKRFSRA DALQSHMRIH 60 ANEKPYECDV CDKAFRHSSS LKVHMRIHTN EKPYECDVCE KRFTQSGALK YHMRIHTNEK 120 PYECDVCEKR FRTSGSLTQH KRTHTNEKPY KCDVCEKRFR TSDNLKTHMR THTNEKPYKC 180 VVCEARFSQL GNLQSHVRIH H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 7e-55 | 1 | 200 | 6 | 188 | Aart |
2i13_B | 7e-55 | 1 | 200 | 6 | 188 | Aart |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082275 | 0.0 | FO082275.1 Bathycoccus prasinos genomic : Chromosome_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007513606.1 | 1e-148 | PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein | ||||
Swissprot | A6NK53 | 3e-72 | ZN233_HUMAN; Zinc finger protein 233 | ||||
TrEMBL | K8EDN6 | 1e-146 | K8EDN6_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein) | ||||
STRING | XP_007513606.1 | 1e-147 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 7e-13 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19016148 |