PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy04g01170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 214aa MW: 25613 Da PI: 8.2311 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 26.8 | 1.3e-08 | 78 | 100 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k+F +s+L rH+rtH Bathy04g01170 78 HECDVCEKVFAKPSDLARHMRTH 100 78********************9 PP | |||||||
2 | zf-C2H2 | 29 | 2.5e-09 | 106 | 128 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+Fs++ nLk+H+r H Bathy04g01170 106 YECDVCEKRFSDSGNLKKHMRIH 128 99*******************99 PP | |||||||
3 | zf-C2H2 | 26.8 | 1.2e-08 | 134 | 156 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++snLk+H r H Bathy04g01170 134 YECDVCEKRFRTSSNLKVHARIH 156 99*******************99 PP | |||||||
4 | zf-C2H2 | 24.5 | 6.9e-08 | 162 | 184 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++ LkrH+r H Bathy04g01170 162 YECDVCEKRFRHSQGLKRHMRIH 184 99*******************99 PP | |||||||
5 | zf-C2H2 | 18.8 | 4.4e-06 | 190 | 213 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C k++++ Lk H+rt H Bathy04g01170 190 FECHVCEKRYRHATGLKYHMRTqH 213 89********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.12E-19 | 77 | 128 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.7E-16 | 78 | 107 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 1.5E-4 | 78 | 100 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 1.1E-6 | 78 | 100 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 15.646 | 78 | 105 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.7E-5 | 106 | 128 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.602 | 106 | 133 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 4.6E-7 | 106 | 128 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 108 | 128 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.6E-18 | 108 | 127 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.94E-24 | 115 | 171 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.5E-19 | 128 | 152 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 5.4E-4 | 134 | 156 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 2.1E-6 | 134 | 156 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 16.186 | 134 | 161 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 136 | 156 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.3E-18 | 153 | 181 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.12E-18 | 156 | 208 | No hit | No description |
SMART | SM00355 | 1.3E-4 | 162 | 184 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 2.0E-5 | 162 | 184 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 16.228 | 162 | 189 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 164 | 184 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.6E-12 | 182 | 211 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.014 | 190 | 213 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.97 | 190 | 213 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 192 | 213 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MSRRKNKHPK RAVNVETVVV ASAVEEREEE EEEEEEEEPP VLCLRIPDED EVVFEIFEQK 60 EIRKEKTTTT RGKRKRGHEC DVCEKVFAKP SDLARHMRTH TNEKPYECDV CEKRFSDSGN 120 LKKHMRIHTN EKPYECDVCE KRFRTSSNLK VHARIHTNEK PYECDVCEKR FRHSQGLKRH 180 MRIHTNERPF ECHVCEKRYR HATGLKYHMR TQH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 3e-36 | 78 | 211 | 4 | 188 | Aart |
2i13_B | 3e-36 | 78 | 211 | 4 | 188 | Aart |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082275 | 0.0 | FO082275.1 Bathycoccus prasinos genomic : Chromosome_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007513494.1 | 1e-153 | PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein | ||||
TrEMBL | K8EDG4 | 1e-152 | K8EDG4_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein) | ||||
STRING | XP_007513494.1 | 1e-153 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 2e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19016142 |