PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy03g02810
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family GATA
Protein Properties Length: 403aa    MW: 42165.1 Da    PI: 9.4393
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy03g02810genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.33.8e-17211244134
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                    C+ C+t kTplWR+gp g+ktLCnaCG+++++ +
  Bathy03g02810 211 CAFCRTQKTPLWRNGPFGPKTLCNACGVKFKLGK 244
                    9******************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.3E-12205265IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.334205242IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.95E-11207244No hitNo description
Gene3DG3DSA:3.30.50.101.9E-13209243IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.98E-12210242No hitNo description
PfamPF003204.5E-15211244IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MANQSRDDHL ANPMAMMMMA GPDANNATTA AAGTNNDINL VRPTASNTTT YANAAPYGGQ  60
MPGPNNYFGN PFFMSQMWNN AAAMMNMNAA AAAAAATGNF PAMMGAMPQQ LQGQPQPITA  120
AAATGSAKKN STTRLRDMTK QAKSRSDNSE ATSHKESPLS DDEVEHPQKE RRRHKQEEEE  180
GEEQDAKDHQ PQLAKPVVDD SLPEPCANKT CAFCRTQKTP LWRNGPFGPK TLCNACGVKF  240
KLGKLAGDED GHVVSVIVPR QKRRKNGSAG TASHAAATAA AQNAATSSEA VGASNTATAM  300
TSSNNATASA TARFAAVTAA NAARAGFSNA PLKVRHTVHT KKSAEPKVRG IVGGWRPEMG  360
GPMRVSSPFV VADYDGAVLL MVLAGENDKT ATTTTTTTVS NT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822760.0FO082276.1 Bathycoccus prasinos genomic : Chromosome_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007513911.10.0predicted protein
TrEMBLK8F1C90.0K8F1C9_9CHLO; Uncharacterized protein
STRINGXP_007513911.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP633544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-13GATA transcription factor 16