PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy02g04070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 192aa MW: 22785.6 Da PI: 6.7782 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.7 | 1.1e-06 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k+F ++s L+ H r H Bathy02g04070 84 HECDFCEKVFVTPSALTIHKRIH 106 78*******************99 PP | |||||||
2 | zf-C2H2 | 24.4 | 7.5e-08 | 112 | 134 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k++++ nLk+H+r H Bathy02g04070 112 YECDVCEKRCTTAGNLKVHMRIH 134 99*******************99 PP | |||||||
3 | zf-C2H2 | 23.5 | 1.4e-07 | 140 | 162 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+ + +Lk H+r H Bathy02g04070 140 YECDVCEKCFRESGTLKIHMRIH 162 99*******************99 PP | |||||||
4 | zf-C2H2 | 17.6 | 1.1e-05 | 168 | 191 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C C+k++++ +L+ H rt H Bathy02g04070 168 YECDVCKKRYRSAQSLRYHTRTqH 191 99********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 14.627 | 84 | 111 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.5E-14 | 84 | 112 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 0.0085 | 84 | 106 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0014 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.71E-23 | 92 | 149 | No hit | No description |
Pfam | PF00096 | 9.3E-6 | 112 | 134 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 14.253 | 112 | 139 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 7.4E-5 | 112 | 134 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.2E-14 | 113 | 131 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 114 | 134 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.2E-18 | 132 | 159 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.42E-19 | 134 | 186 | No hit | No description |
PROSITE profile | PS50157 | 15.791 | 140 | 167 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.7E-4 | 140 | 162 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 142 | 162 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.9E-13 | 160 | 189 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.032 | 168 | 191 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.4E-6 | 168 | 191 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0035 | 168 | 191 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 170 | 191 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MRRKNPHPKR AVNARTVFKV VKGRREEEEV EEDEPVLCLR IPDEEDDLEA NHHQIQKEEE 60 GEEEEEEEEE EITVRKGAKR KRGHECDFCE KVFVTPSALT IHKRIHTNEK PYECDVCEKR 120 CTTAGNLKVH MRIHTNEKPY ECDVCEKCFR ESGTLKIHMR IHTNEKPYEC DVCKKRYRSA 180 QSLRYHTRTQ H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 1e-23 | 84 | 189 | 7 | 188 | Aart |
2i13_B | 1e-23 | 84 | 189 | 7 | 188 | Aart |
6e93_A | 3e-24 | 82 | 188 | 2 | 107 | Zinc finger and BTB domain-containing protein 38 |
6e94_A | 4e-24 | 82 | 188 | 2 | 107 | Zinc finger and BTB domain-containing protein 38 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082277 | 0.0 | FO082277.1 Bathycoccus prasinos genomic : Chromosome_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007514571.1 | 1e-136 | PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein | ||||
Swissprot | Q8NB50 | 2e-32 | ZFP62_HUMAN; Zinc finger protein 62 homolog | ||||
TrEMBL | K8EAM5 | 1e-135 | K8EAM5_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein) | ||||
STRING | XP_007514571.1 | 1e-135 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.1 | 7e-11 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19017520 |