PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy02g02870
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family GATA
Protein Properties Length: 683aa    MW: 74789.3 Da    PI: 8.5135
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy02g02870genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.54.2e-14346382135
           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    CsnCg+ +  Tpl+Rrgpdg ++LCnaCGl y+++g+
  Bathy02g02870 346 CSNCGAGSnsTPLMRRGPDGVRSLCNACGLWYARRGT 382
                    *****98889**********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.3E-9340393IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-10340387No hitNo description
PROSITE profilePS5011413.072340400IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-15344386IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440346373IPR000679Zinc finger, GATA-type
CDDcd002021.03E-13346386No hitNo description
PfamPF003202.5E-11346382IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MEKEEGSGVS ATVDKIQREN NIPKNASESD FTYTTNFEMQ QQNSSGGSLA RRENAGSSEP  60
SSKPNKPSLL NPNKNNNTNN NNNDKNAGES AKPAGTDATT MTTTDAKQRD TASPSRRESG  120
RLKSLHVQRA TLDAEAKARA LKFTCSLFPR ANIRVKYLGM VDEKIAEQMD VEKLAKEHYK  180
EGGNVHPTSS NTNNTSSNDE EKNEMLKPLG YRCEGTLFSE PFEATIDESG YHFVRWGAEG  240
EGRRVVETPC STSTSQKAEE TSEKQQQQQQ QPETSNNDSS ETTTTTTTAN KKGLLDVDEA  300
VKCIVEEIAR RFENKIPGMK PSSSSSLKLN TGNSNNNNNG NGGRLCSNCG AGSNSTPLMR  360
RGPDGVRSLC NACGLWYARR GTQRPIEGGS VAEREAKAAK ETMAAAAAAG EEQGGDGEFN  420
KRTKEEEDEA KRQLEKEIEE KEKLARIVPK IESLNGFAVF GYHEHIVQDA LRAHIIAKYA  480
PSMGMDVLMA AGMHKYGRYE TSFMLSNGGK NQPAQQRRSS KRERKEITKF VDVAYTNAPQ  540
KRKTNASSKT AAKRLKAQQA SEEKAAKKAA TASAGASAGG GAVTKKVGMR KNASDRSMAD  600
QFFGLNDSFH ERPISSNNNN QNVQQEQRQP TAAEDLQSWE NVLFSNGFGG EPLYTNIIPG  660
NQQRHQEHHQ SNTMFFAAEQ YQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822770.0FO082277.1 Bathycoccus prasinos genomic : Chromosome_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007515054.10.0predicted protein
TrEMBLK8EBR20.0K8EBR2_9CHLO; Uncharacterized protein
STRINGXP_007515054.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP813455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-09ZIM-like 1