PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy02g00410
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 264aa    MW: 31657 Da    PI: 5.2011
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy02g00410genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.7e-07100122123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C k+F+ +s L +H+r+H
  Bathy02g00410 100 HECDVCEKVFRVPSALAVHMRSH 122
                    78********************9 PP
2zf-C2H226.41.7e-08128150123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+r s Lk H+r H
  Bathy02g00410 128 YECDVCEKRFTRASGLKMHMRIH 150
                    99*******************99 PP
3zf-C2H2271.1e-08156178123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+Fs++s+L++H+r H
  Bathy02g00410 156 YECDVCEKRFSQSSSLNTHMRIH 178
                    99*******************99 PP
4zf-C2H222.82.4e-07184206123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C+k F+++  L++H r H
  Bathy02g00410 184 YECDVCDKAFRDSGALTNHKRIH 206
                    99*******************99 PP
5zf-C2H224.85.5e-08212234123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+ + +L++H+r H
  Bathy02g00410 212 YECDVCEKRFRESGHLQTHMRIH 234
                    99*******************99 PP
6zf-C2H225.92.5e-08240263123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y C  C k+F+++snLkrH rt H
  Bathy02g00410 240 YDCDVCEKRFRNSSNLKRHVRTqH 263
                    88********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.601.103.0E-44494No hitNo description
SuperFamilySSF576674.72E-1998150No hitNo description
Gene3DG3DSA:3.30.160.602.9E-1499129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.5E-4100122IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.191100127IPR007087Zinc finger, C2H2
PfamPF000961.7E-5100122IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SMARTSM003556.2E-5128150IPR015880Zinc finger, C2H2-like
PfamPF000964.3E-6128150IPR007087Zinc finger, C2H2
PROSITE profilePS5015716.477128155IPR007087Zinc finger, C2H2
PROSITE patternPS000280130150IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.5E-18130157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.31E-24137193No hitNo description
SMARTSM003556.0E-5156178IPR015880Zinc finger, C2H2-like
PfamPF000962.1E-6156178IPR007087Zinc finger, C2H2
PROSITE profilePS5015715.667156183IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-18158185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
SMARTSM003552.6E-4184206IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015715.978184211IPR007087Zinc finger, C2H2
PfamPF000962.9E-5184206IPR007087Zinc finger, C2H2
PROSITE patternPS000280186206IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-16186212IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.54E-22192249No hitNo description
SMARTSM003551.5E-4212234IPR015880Zinc finger, C2H2-like
PfamPF000962.7E-5212234IPR007087Zinc finger, C2H2
PROSITE profilePS5015716.249212239IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.8E-15213231IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.2E-17232261IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.757240263IPR007087Zinc finger, C2H2
SMARTSM003552.6E-4240263IPR015880Zinc finger, C2H2-like
PfamPF000963.4E-6240263IPR007087Zinc finger, C2H2
PROSITE patternPS000280242263IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MRRKNPHPKR AENARTVLKV PKGEREELRE KEEEPLVLCL QIPPDDDDDE DDEEEEEEEE  60
EEEEEEEEEE EEEEEEYEMD EQTRKEETAF RKGSKRKRTH ECDVCEKVFR VPSALAVHMR  120
SHTREKPYEC DVCEKRFTRA SGLKMHMRIH TNEKPYECDV CEKRFSQSSS LNTHMRIHTN  180
EKAYECDVCD KAFRDSGALT NHKRIHTKEK PYECDVCEKR FRESGHLQTH MRIHTNEKPY  240
DCDVCEKRFR NSSNLKRHVR TQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A1e-42782613188Aart
2i13_B1e-42782613188Aart
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19499KRKRTH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822770.0FO082277.1 Bathycoccus prasinos genomic : Chromosome_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007514573.10.0PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotQ8BI993e-55ZN879_MOUSE; Zinc finger protein 879
TrEMBLK8EZV60.0K8EZV6_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007514573.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.22e-12C2H2 family protein