PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bathy02g00180

Organism

Bathycoccus prasinos

Taxonomic ID

41875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus

Family

Nin-like

Protein Properties

Length: 655aa MW: 71456.7 Da PI: 8.0033

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bathy02g00180	genome	ORCAE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	75.1	8.1e-24	14	60	6	52
RWP-RK 6 sledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 s++dl+ F+lpi+dAAk+Lg+c+TvLK++CR++GI RWP+Rk+k++ Bathy02g00180 14 SMDDLRTVFHLPINDAAKKLGLCVTVLKQKCREFGIVRWPFRKVKKI 60 5789*****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.235	1	80	IPR003035	RWP-RK domain
Pfam	PF02042	4.1E-20	14	60	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence Send to blast
MPNRTQVTVQ NVQSMDDLRT VFHLPINDAA KKLGLCVTVL KQKCREFGIV RWPFRKVKKI 60 DMLIKQLEEE KEKVVSSSSV SGKEEEPPRG LKEQQGEERG GNFVVVGAPT RKVILEDIEN 120 RLQEMLKMRD ELYADPNSNI HLLPNSTGSA INSNGGLTAE KRGESNNTRS PSRQQAKAAK 180 AAAAANAVQK HQLQLQEKST EKDDDDNGAE KKKSTTATVA TNTEMKIAES THTSQESDER 240 RADVVQIDDE FSLSAPTEEE KKKKGKSFST GRLWQRKERV IEKATAATPT RPTLKRQGSN 300 SCSGKDSGLL FDALLDAATA LDTTKKNGGK GEQVSGDENK NVINNSDDYE WGRNTENEAG 360 QDESIIGSPR KVRRSCDVQR SVRPPSSDIS REKKGLEPRP NSAPLNMNNI SEADVAAAFY 420 QQMQLQHVQN TAAAVAAMQA AMATSMNPSQ QSIPLMYQVP YSLQYMNLNS NMMQVQWAEM 480 NKNINATAAT ATNTAGMSLL ERRAAEAAAS IGGGNVAMPP SSLDLKIPTA SREGSTHSGT 540 YFPYYGGGMY SPRQYHHYQQ QQMMSMPVLD QSAASDGNSS LETGGVYTAE DKNIRGSGVA 600 SPSSIGAFPS SNRVSFEDMT EHPSPISPTN TTAGIHRPVA LKRGHLELQS NQFI*

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence Send to blast

MPNRTQVTVQ NVQSMDDLRT VFHLPINDAA KKLGLCVTVL KQKCREFGIV RWPFRKVKKI  60
DMLIKQLEEE KEKVVSSSSV SGKEEEPPRG LKEQQGEERG GNFVVVGAPT RKVILEDIEN  120
RLQEMLKMRD ELYADPNSNI HLLPNSTGSA INSNGGLTAE KRGESNNTRS PSRQQAKAAK  180
AAAAANAVQK HQLQLQEKST EKDDDDNGAE KKKSTTATVA TNTEMKIAES THTSQESDER  240
RADVVQIDDE FSLSAPTEEE KKKKGKSFST GRLWQRKERV IEKATAATPT RPTLKRQGSN  300
SCSGKDSGLL FDALLDAATA LDTTKKNGGK GEQVSGDENK NVINNSDDYE WGRNTENEAG  360
QDESIIGSPR KVRRSCDVQR SVRPPSSDIS REKKGLEPRP NSAPLNMNNI SEADVAAAFY  420
QQMQLQHVQN TAAAVAAMQA AMATSMNPSQ QSIPLMYQVP YSLQYMNLNS NMMQVQWAEM  480
NKNINATAAT ATNTAGMSLL ERRAAEAAAS IGGGNVAMPP SSLDLKIPTA SREGSTHSGT  540
YFPYYGGGMY SPRQYHHYQQ QQMMSMPVLD QSAASDGNSS LETGGVYTAE DKNIRGSGVA  600
SPSSIGAFPS SNRVSFEDMT EHPSPISPTN TTAGIHRPVA LKRGHLELQS NQFI*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO082277	0.0	FO082277.1 Bathycoccus prasinos genomic : Chromosome_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007514864.1	0.0	predicted protein
TrEMBL	K8EBC2	0.0	K8EBC2_9CHLO; Uncharacterized protein
STRING	XP_007514864.1	0.0	(Bathycoccus prasinos)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	8e-12	RWP-RK domain-containing protein

Link Out ? help Back to Top
Entrez Gene	19017131