PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bathy01g05880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
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Family | C2H2 | ||||||||
Protein Properties | Length: 237aa MW: 28238.6 Da PI: 7.5003 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 28 | 5.1e-09 | 101 | 123 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C k+F+r++nLk H+r H Bathy01g05880 101 HECDVCEKVFTRSDNLKAHMRIH 123 78*******************99 PP | |||||||
2 | zf-C2H2 | 24.7 | 6.1e-08 | 129 | 151 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+Fs++s Lk+H r H Bathy01g05880 129 YECDVCEKRFSDSSALKNHTRIH 151 99*******************99 PP | |||||||
3 | zf-C2H2 | 23.3 | 1.6e-07 | 157 | 179 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k F++ +L++H r H Bathy01g05880 157 YECDVCDKAFRQYGHLQKHTRIH 179 99*******************99 PP | |||||||
4 | zf-C2H2 | 26.1 | 2.2e-08 | 185 | 207 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C k+F+++snLk+H r H Bathy01g05880 185 YECDVCEKRFTQSSNLKSHKRIH 207 99*******************99 PP | |||||||
5 | zf-C2H2 | 19.1 | 3.5e-06 | 213 | 236 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ C k+++ +Lk H+rt H Bathy01g05880 213 YECHVCEKRYRYAKSLKYHMRTqH 236 99********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.0E-15 | 99 | 123 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.8E-19 | 100 | 151 | No hit | No description |
PROSITE profile | PS50157 | 15.812 | 101 | 128 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.6E-4 | 101 | 123 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 5.4E-7 | 101 | 123 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 103 | 123 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.3E-18 | 124 | 155 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 4.0E-4 | 129 | 151 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 1.5E-5 | 129 | 151 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 16.165 | 129 | 156 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 131 | 151 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.89E-23 | 138 | 194 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.1E-17 | 156 | 186 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 2.3E-4 | 157 | 179 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF00096 | 1.2E-5 | 157 | 179 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 16.456 | 157 | 184 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 159 | 179 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.85E-19 | 179 | 231 | No hit | No description |
SMART | SM00355 | 5.4E-4 | 185 | 207 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 16.706 | 185 | 212 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 4.7E-6 | 185 | 207 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 187 | 207 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.6E-18 | 187 | 207 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene3D | G3DSA:3.30.160.60 | 3.2E-10 | 208 | 234 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.011 | 213 | 236 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0061 | 213 | 236 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.0033 | 213 | 236 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 215 | 236 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MGRRKNPHPK RAVNARTVLK VARDKEEEVE EEEPVLCSRI PDEEDDLEAN QNQIRKEEEE 60 EEGEDDDVEQ LRRIMCVPCD DVVEQNQTRK DAKGVKRKRG HECDVCEKVF TRSDNLKAHM 120 RIHTNEKPYE CDVCEKRFSD SSALKNHTRI HTNERPYECD VCDKAFRQYG HLQKHTRIHT 180 NEKPYECDVC EKRFTQSSNL KSHKRIHTKE KPYECHVCEK RYRYAKSLKY HMRTQH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 5e-39 | 80 | 234 | 4 | 188 | Aart |
2i13_B | 5e-39 | 80 | 234 | 4 | 188 | Aart |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FO082278 | 0.0 | FO082278.1 Bathycoccus prasinos genomic : Chromosome_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007515164.1 | 1e-173 | PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein | ||||
TrEMBL | K8EXR7 | 1e-172 | K8EXR7_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein) | ||||
STRING | XP_007515164.1 | 1e-172 | (Bathycoccus prasinos) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 1e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 19018323 |