PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy01g01390
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family C2H2
Protein Properties Length: 269aa    MW: 32139.4 Da    PI: 8.1107
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy01g01390genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H225.14.4e-08105127123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C  C k+F+ +snL  H+r H
  Bathy01g01390 105 HECDVCEKVFRAPSNLAIHMRIH 127
                    78*******************99 PP
2zf-C2H226.12.1e-08133155123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C+k F+ + +Lk+H+r H
  Bathy01g01390 133 YECDVCDKAFRESGTLKKHMRIH 155
                    99*******************99 PP
3zf-C2H222.82.4e-07161183123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k+F+++ +LkrH+r H
  Bathy01g01390 161 YECDVCEKRFTQSCSLKRHMRIH 183
                    99*******************99 PP
4zf-C2H224.85.3e-08189211123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C k F+++s Lk+H+r H
  Bathy01g01390 189 YECDVCEKKFRHSSGLKSHMRIH 211
                    99*******************99 PP
5zf-C2H220.51.3e-06217239123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C  C + F++  +L+ H+r H
  Bathy01g01390 217 YECDVCEMKFRQYGHLQDHMRIH 239
                    99*******************99 PP
6zf-C2H224.19.4e-08245268123
                    EEETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                    y+C  C k F++ s+LkrH rt H
  Bathy01g01390 245 YECDVCEKAFRQLSTLKRHKRTqH 268
                    99********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.3E-16105134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000963.7E-6105127IPR007087Zinc finger, C2H2
SMARTSM003558.3E-4105127IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.918105132IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
SuperFamilySSF576672.12E-24113170No hitNo description
PfamPF000965.0E-6133155IPR007087Zinc finger, C2H2
PROSITE profilePS5015716.623133160IPR007087Zinc finger, C2H2
SMARTSM003556.9E-5133155IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.9E-18135162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280135155IPR007087Zinc finger, C2H2
PROSITE profilePS5015716.581161188IPR007087Zinc finger, C2H2
PfamPF000962.4E-5161183IPR007087Zinc finger, C2H2
SMARTSM003551.8E-4161183IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280163183IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.2E-18163182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.14E-22170226No hitNo description
Gene3DG3DSA:3.30.160.601.1E-17183207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015716.352189216IPR007087Zinc finger, C2H2
PfamPF000966.9E-6189211IPR007087Zinc finger, C2H2
SMARTSM003552.3E-4189211IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.7E-16208236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.61E-19211263No hitNo description
PROSITE profilePS5015714.627217244IPR007087Zinc finger, C2H2
SMARTSM003551.5E-4217239IPR015880Zinc finger, C2H2-like
PfamPF128740.015217238No hitNo description
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-14237266IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000962.1E-5245268IPR007087Zinc finger, C2H2
SMARTSM003559.1E-4245268IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.006245268IPR007087Zinc finger, C2H2
PROSITE patternPS000280247268IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEELFLQNVS IFFSSSQSFD LLLRFNTTTN NNIMRRKNPH PQRAVNARTF LRVVKGRREE  60
EGEEPVLCLR IPDEDDFEAN HQIQKEEEEE EEITVRKGTK RKRGHECDVC EKVFRAPSNL  120
AIHMRIHTDE KPYECDVCDK AFRESGTLKK HMRIHTNERP YECDVCEKRF TQSCSLKRHM  180
RIHTNEKPYE CDVCEKKFRH SSGLKSHMRI HTNEKPYECD VCEMKFRQYG HLQDHMRIHA  240
NEKPYECDVC EKAFRQLSTL KRHKRTQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A5e-4410526615188Aart
2i13_B5e-4410526615188Aart
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822780.0FO082278.1 Bathycoccus prasinos genomic : Chromosome_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007515391.10.0PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein
SwissprotQ8NA423e-54ZN383_HUMAN; Zinc finger protein 383
TrEMBLK8EP970.0K8EP97_9CHLO; PREDICTED: similar to Zinc finger protein 271 (Zinc finger protein 7) (HZF7) (Zinc finger protein ZNFphex133) (Epstein-Barr virus-induced zinc finger protein) (ZNF-EB) (CT-ZFP48) (Zinc finger protein)
STRINGXP_007515391.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.22e-13C2H2 family protein