PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013639632.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 341aa MW: 38799.8 Da PI: 6.614

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013639632.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.9e-05	173	192	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_013639632.1 173 FSCPLCFKTFNRYNNMQMHM 192 89*****************9 PP
2	zf-C2H2	13.1	0.00029	257	279	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cgk F k + ++H +++ XP_013639632.1 257 FACRRCGKAFAVKGDWRTHEKNC 279 78*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.66	173	200	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.8E-5	173	192	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	175	195	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.22E-6	239	277	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.2E-5	243	277	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.767	257	277	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MSNPACSNLF NNGFDNTNFN YSTPLSYIYN SQNSFYHPDT TNPNYMSPTT TTSIFPNYSP 60 PLREALPLLS LSPIRHQEQQ DQTCFLNTDH TTSSNFHDVT VDLHLGLPNY GAGGSYIAPE 120 ATTEEQDQDH DQEVEVTVES HLHDDDDHHG DLYRGHNYWI PTPAQILIGP TQFSCPLCFK 180 TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTGMLRLPCF CCAPGCKNNI DHPRAKPLKD 240 FRTLQTHYKR KHGSRPFACR RCGKAFAVKG DWRTHEKNCG KLWYCSCGSD FKHKRSLKDH 300 VKAFGNGHVP CGIDSFGGDH EDYYEAASEI EQQDDCNNNE C

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00197	DAP	Transfer from AT1G51220	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013639632.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ311810	0.0	AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013639632.1	0.0	PREDICTED: zinc finger protein WIP5-like
Swissprot	Q8W031	0.0	ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBL	A0A078HAZ5	0.0	A0A078HAZ5_BRANA; BnaC05g27160D protein
TrEMBL	A0A3P6EIT8	0.0	A0A3P6EIT8_BRAOL; Uncharacterized protein (Fragment)
TrEMBL	M4ENT0	0.0	M4ENT0_BRARP; Uncharacterized protein
STRING	Bra030450.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51220.1	0.0	WIP domain protein 5

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]