PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013639607.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 224aa    MW: 24304.1 Da    PI: 8.2825
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013639607.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.67e-3446101258
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     +k+rY+eClkNhA+++GghavDGC+Efmps ge+g+ +alkCaACgCHRnFHR+e+e
  XP_013639607.1  46 SKIRYRECLKNHAVNIGGHAVDGCCEFMPS-GEDGSLDALKCAACGCHRNFHRKETE 101
                     579**************************9.999********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.8E-3048100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2648101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.1E-294999IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.4185099IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.606.2E-33148223IPR009057Homeodomain-like
SuperFamilySSF466892.36E-20149222IPR009057Homeodomain-like
TIGRFAMsTIGR015657.7E-28162218IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MNFEEQEEEM EMSGVNPAGG YDSLSGEGAT SSGGGGGGSR KSVGGSKIRY RECLKNHAVN  60
IGGHAVDGCC EFMPSGEDGS LDALKCAACG CHRNFHRKET EIMSGRAYRA PTYYNRPPQL  120
PPPGYLHLTS PAAAGQPYRP TAASGDEEDT SNPSSSGGTR AKRFRTKFTA EQKEKMLAFA  180
ERLGWRIQKH DDAAVEQFCA ETGVRRQVLK IWMHNNKNSL GKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-361612191775ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013639607.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532610.0AK353261.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-39-I06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639607.11e-168PREDICTED: zinc-finger homeodomain protein 2
SwissprotQ9SB611e-121ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A0D3A6131e-167A0A0D3A613_BRAOL; Uncharacterized protein
STRINGBo1g039210.11e-168(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45052454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-113homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]