PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013639474.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 420aa MW: 49072.8 Da PI: 6.2529 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.7 | 2.7e-10 | 102 | 127 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++Cr +++tG C +G++C F+H+ XP_013639474.1 102 PGERICRSYLQTGLCDHGSNCLFNHP 127 5789*********************9 PP | |||||||
2 | zf-CCCH | 23.5 | 9.6e-08 | 128 | 147 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 C+ff+r G+C G+ CkF+H XP_013639474.1 128 TCKFFRR-GFCTDGSACKFIH 147 6**9999.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.7E-4 | 101 | 128 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.972 | 101 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-7 | 103 | 127 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 104 | 127 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.5E-5 | 105 | 126 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.629 | 123 | 150 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-5 | 128 | 147 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 128 | 148 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7 | 129 | 149 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-4 | 129 | 148 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MEETKERDLD SRSRKSDVTT GRRHKRDPGT WAEKREPDLI TDHKESYVVD TLKQQRLGDV 60 EMQQQRSHET ESKNWATNLG WERSEPKTIS DERIQNGYQV RPGERICRSY LQTGLCDHGS 120 NCLFNHPTCK FFRRGFCTDG SACKFIHAKN NEAPRLPNNT MRQPLPSDVK ILPEFSHPKD 180 RDGAETMRQG SGRHETESAY RPDEKKCNSS LSQISVVGMV AGSSSYKEKE QRQAHDDPLE 240 LRDNTEWQRG QAQENVHEHR PRDITDCQRY YEMGRRDAQE IVQQHRQRDI TEFLRYFEMG 300 RRDAQVIVQQ HRQREASGRQ RYLEEEKSEA QANDQEQRLM VTTLDGRFDE RRHETESSSM 360 AEKREELFTS LQSRFKDVID DIAAGYERVG TEHGEGNVGR QRVEAEEIVQ EQSNRDGDVL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013639474.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013639474.1 | 0.0 | PREDICTED: putative zinc finger CCCH domain-containing protein 9 | ||||
TrEMBL | A0A0D3CEJ6 | 0.0 | A0A0D3CEJ6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FI98 | 0.0 | A0A3P6FI98_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g059850.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18796 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29600.1 | 8e-17 | C3H family protein |