PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013639193.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 270aa    MW: 31045.4 Da    PI: 5.534
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013639193.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.12e-2063116356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t++q++ Le+ Fe ++++  e++++LA+klgL+ rqV vWFqNrRa++k
  XP_013639193.1  63 KKRRLTSQQVHLLEKSFETENKLEPERKTQLANKLGLQPRQVAVWFQNRRARWK 116
                     56689************************************************9 PP
2HD-ZIP_I/II129.11.8e-4163154293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkrrl+++qv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+d++ Lk++yd+l ++ +++ k+++ Lr+el++
  XP_013639193.1  63 KKRRLTSQQVHLLEKSFETENKLEPERKTQLANKLGLQPRQVAVWFQNRRARWKTKQLERDFSLLKSSYDQLLSNYDSILKDNHLLRSELTS 154
                     9**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.95E-2048120IPR009057Homeodomain-like
PROSITE profilePS5007117.78358118IPR001356Homeobox domain
SMARTSM003897.0E-1961122IPR001356Homeobox domain
PfamPF000461.1E-1763116IPR001356Homeobox domain
CDDcd000861.32E-1763119No hitNo description
Gene3DG3DSA:1.10.10.602.7E-2165124IPR009057Homeodomain-like
PRINTSPR000317.7E-68998IPR000047Helix-turn-helix motif
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PRINTSPR000317.7E-698114IPR000047Helix-turn-helix motif
PfamPF021831.4E-14118160IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MESNSFFFDP SLSHGNMFFL NPAAVQGARS MMNMEESSKR RPFFCSHEDL YDDDYYDDHT  60
PDKKRRLTSQ QVHLLEKSFE TENKLEPERK TQLANKLGLQ PRQVAVWFQN RRARWKTKQL  120
ERDFSLLKSS YDQLLSNYDS ILKDNHLLRS ELTSLAEKLQ AKEDTTNKPP GQVPEANPQQ  180
QLHPVNMNHI EPPIKTEDRL SSGSTVLDED APQLLDSCDS YFPNIAPIHH SEEHNNNGSV  240
NDLSCFVDVF VPTTSPPHGH GESLGFWGWT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110118RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.4051e-119leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013639193.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639193.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
RefseqXP_013729700.10.0homeobox-leucine zipper protein HAT5-like
SwissprotQ022831e-129HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A0D3AG700.0A0A0D3AG70_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FMT90.0A0A3P6FMT9_BRAOL; Uncharacterized protein
STRINGBo1g158930.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88842738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-132homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]