PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638989.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 449aa    MW: 50246.4 Da    PI: 6.9237
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638989.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.16.2e-48171432128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     +pGfrFhPtdeelv++yLk+k+ +k+l++ ++i  vd+yk+eP dLp +  +k+++++w++F++r++ky++  r+ r t++gyWkatgkd+ ++ 
  XP_013638989.1  17 APGFRFHPTDEELVMYYLKRKMYRKRLTV-NAIGFVDVYKIEPDDLPgQsVLKTGDRQWFYFTPRSRKYPNAARSGRGTATGYWKATGKDRVIVY 110
                     69*************************99.89**************96347788999*************************************9 PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ vglkktLvfy+grap+ge+tdWvmhey++
  XP_013638989.1 111 -NSRSVGLKKTLVFYRGRAPTGERTDWVMHEYTM 143
                     .999****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-5116149IPR003441NAC domain
PROSITE profilePS5100549.44816169IPR003441NAC domain
PfamPF023655.0E-2518142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MADPCPNSCF KEGKFTAPGF RFHPTDEELV MYYLKRKMYR KRLTVNAIGF VDVYKIEPDD  60
LPGQSVLKTG DRQWFYFTPR SRKYPNAARS GRGTATGYWK ATGKDRVIVY NSRSVGLKKT  120
LVFYRGRAPT GERTDWVMHE YTMNEEELDR CTNAKVNREE KMQSTLVKNS SGEFLKPQQT  180
GRFLPNGEPY IRPSSSGVEP FVFEIEDYIE MDDLLAPELA VERPAQFLNP GEFGDFNEFD  240
QLFHDVSMSL DKEPIAQGAS VHPSSPSKFA DNTSNEKQQF QDQIPENKVN NNNLDDFTDD  300
KWFQDDDDQA VRFDQPQSIT SGAFAPLPSS GVMPGSTNLT VSAQDQEGGN GGGTSPFTSA  360
LWAFMDSIPS TPASACEGPI NRTFVRMSSF SRIRYSKKAN GTPPVTSTVA AKKRSRNRGF  420
LLLSIVGALC AIFWVFIATV RASGRPVLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-421814317140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1412417KRSRNR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013638989.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325131e-89AC232513.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB065E07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638989.10.0PREDICTED: NAC domain-containing protein 17-like isoform X2
SwissprotQ9XIC51e-109NAC17_ARATH; NAC domain-containing protein 17
TrEMBLA0A0D3CGH10.0A0A0D3CGH1_BRAOL; Uncharacterized protein
STRINGBo5g085420.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-104NAC domain containing protein 17
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Van Aken O,Ford E,Lister R,Huang S,Millar AH
    Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
    Plant J., 2016. 88(4): p. 542-558
    [PMID:27425258]
  4. Hu Z, et al.
    Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
    Plant Cell, 2016. 28(9): p. 2276-2290
    [PMID:27543091]
  5. Chi YH, et al.
    The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647
    [PMID:28088515]
  6. Van Aken O,Pogson BJ
    Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
    Cell Death Differ., 2017. 24(6): p. 955-960
    [PMID:28498364]
  7. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]