PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013638988.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 453aa MW: 50764 Da PI: 6.9234 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154.1 | 6.3e-48 | 17 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +pGfrFhPtdeelv++yLk+k+ +k+l++ ++i vd+yk+eP dLp + +k+++++w++F++r++ky++ r+ r t++gyWkatgkd+ ++ XP_013638988.1 17 APGFRFHPTDEELVMYYLKRKMYRKRLTV-NAIGFVDVYKIEPDDLPgQsVLKTGDRQWFYFTPRSRKYPNAARSGRGTATGYWKATGKDRVIVY 110 69*************************99.89**************96347788999*************************************9 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vglkktLvfy+grap+ge+tdWvmhey++ XP_013638988.1 111 -NSRSVGLKKTLVFYRGRAPTGERTDWVMHEYTM 143 .999****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.98E-51 | 16 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.718 | 16 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-25 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MADPCPNSCF KEGKFTAPGF RFHPTDEELV MYYLKRKMYR KRLTVNAIGF VDVYKIEPDD 60 LPGQSVLKTG DRQWFYFTPR SRKYPNAARS GRGTATGYWK ATGKDRVIVY NSRSVGLKKT 120 LVFYRGRAPT GERTDWVMHE YTMNEEELDR CTNAKLYLQV NREEKMQSTL VKNSSGEFLK 180 PQQTGRFLPN GEPYIRPSSS GVEPFVFEIE DYIEMDDLLA PELAVERPAQ FLNPGEFGDF 240 NEFDQLFHDV SMSLDKEPIA QGASVHPSSP SKFADNTSNE KQQFQDQIPE NKVNNNNLDD 300 FTDDKWFQDD DDQAVRFDQP QSITSGAFAP LPSSGVMPGS TNLTVSAQDQ EGGNGGGTSP 360 FTSALWAFMD SIPSTPASAC EGPINRTFVR MSSFSRIRYS KKANGTPPVT STVAAKKRSR 420 NRGFLLLSIV GALCAIFWVF IATVRASGRP VLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-42 | 18 | 165 | 17 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 416 | 421 | KRSRNR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013638988.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232513 | 1e-89 | AC232513.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB065E07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013638988.1 | 0.0 | PREDICTED: NAC domain-containing protein 17-like isoform X1 | ||||
Swissprot | Q9XIC5 | 1e-109 | NAC17_ARATH; NAC domain-containing protein 17 | ||||
TrEMBL | A0A0D3CGH1 | 0.0 | A0A0D3CGH1_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g085420.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2812 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-104 | NAC domain containing protein 17 |