PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638778.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 448aa    MW: 49626.4 Da    PI: 4.6476
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638778.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1093.5e-34181102103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+ ++e++sws+ ++sfvv++  ef+   LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  XP_013638778.1  18 FLSKTYDMVDDPLTDEVVSWSSGNKSFVVWNVPEFSILFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFIRGQKQLLKS 103
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k +
  XP_013638778.1 104 IVRRKPS 110
                     ***9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3610102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.8E-5614107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.26E-3314107IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.2E-191841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-2918107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-195668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-196981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MESNCESSTT AVSSIPPFLS KTYDMVDDPL TDEVVSWSSG NKSFVVWNVP EFSILFLPKY  60
FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFIRGQKQL LKSIVRRKPS QVQPPQQPQV  120
QHSSVGACVE VGKFGFEEEV ERLQRDKNVL TQDLVRLRQQ QQVTEHHLQN VGQKVHVMEQ  180
RQQQMMSFLA KAVQSPGFLN QFSQQNNEGN NQHVSEGNKK RRLPVEEQKY AGGYGANGLS  240
CQIVRYQSSM NETADTMLEQ IHNMSNPQSR QEPLSNNDVS FLLGDVPSIS DNGSSTNGAS  300
GVTLADVSSN PAISQILEGI FPYSQVDLLA PNQGAAYGSS NSDVVGCETD NGVCLDPIMA  360
VLAGSMGIEA NAVNELLPGV QDPLCEQLFG ERPVIGDTEE LVSGSVDNGL IMEQLELQSN  420
LRNVLSSNQQ MNHLTEQMGF LTSDALRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-231310724129Heat shock factor protein 1
5d5v_B1e-231310724129Heat shock factor protein 1
5d5v_D1e-231310724129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00328DAPTransfer from AT3G02990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013638778.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638778.10.0PREDICTED: heat stress transcription factor A-1e-like
SwissprotQ9SCW50.0HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLA0A0D3CN510.0A0A0D3CN51_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FZ920.0A0A3P6FZ92_BRAOL; Uncharacterized protein
STRINGBo5g150300.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.10.0heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]