PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638723.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 1083aa    MW: 120280 Da    PI: 9.6722
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638723.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1001.4e-31198254259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK++kg e+prsYYrCt+ +Cpvkkkvers+ d+++++i+Y+g+H+he
  XP_013638723.1 198 DDGYNWRKYGQKPIKGCEYPRSYYRCTHVNCPVKKKVERSS-DGQITQIIYKGQHDHE 254
                     8****************************************.***************8 PP
2WRKY1031.6e-32342400159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct+a+C+v+k+ver+++d k+v++tYeg+Hnh+
  XP_013638723.1 342 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTANCTVRKHVERASTDVKAVITTYEGKHNHD 400
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-28189256IPR003657WRKY domain
SuperFamilySSF1182908.89E-25195256IPR003657WRKY domain
SMARTSM007741.1E-35197255IPR003657WRKY domain
PROSITE profilePS5081124.076198256IPR003657WRKY domain
PfamPF031062.3E-24198253IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-35327402IPR003657WRKY domain
SuperFamilySSF1182901.83E-28334402IPR003657WRKY domain
PROSITE profilePS5081137.711337402IPR003657WRKY domain
SMARTSM007741.3E-37342401IPR003657WRKY domain
PfamPF031061.0E-24343400IPR003657WRKY domain
Gene3DG3DSA:3.30.200.204.0E-31559663No hitNo description
SuperFamilySSF561126.88E-90560856IPR011009Protein kinase-like domain
SMARTSM002204.0E-94565850IPR000719Protein kinase domain
CDDcd078401.20E-136565850No hitNo description
PfamPF000695.0E-70565850IPR000719Protein kinase domain
PROSITE profilePS5001145.87565850IPR000719Protein kinase domain
PROSITE patternPS001070571594IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.104.5E-57664919No hitNo description
PROSITE patternPS001080685697IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1083 aa     Download sequence    Send to blast
MAVGDDVSSM RTTTLVAPTR PTITVPQRPP AIETAAYFLG GGDGLSLSPG PLSFVSSLFV  60
DSFPDLLTPD NQRTTSFSQL LAGAMSVSPG SGRSTAGMIA GGGPLFTIPS GFSPSSLLTS  120
PMFFPPQQSP TQTVFVQPQS QPKRPDSFPN QMPPSTSTTV HGRRSCKAPQ ADRYNNPAAN  180
NNNTNRSYNV VHVDKPADDG YNWRKYGQKP IKGCEYPRSY YRCTHVNCPV KKKVERSSDG  240
QITQIIYKGQ HDHERPQNRR GGGGELRGSG EIGDIHYIGG VGHMESSDDS GYANDHDNDN  300
DDDNEDIPAS KIRKIDGGVS TTHRSVTEPK IIVQTRSEVD LLDDGYRWRK YGQKVVKGNP  360
HPRSYYKCTT ANCTVRKHVE RASTDVKAVI TTYEGKHNHD VPAARNGTAP ATPATAGTSD  420
HHRIVLPALD PFTRPGSILT PPGNFLTISS SIMGCFNSKH SSPPPRPIRR RSDTAANRGH  480
PQNTHKPYVL PTPPSHRRVV NSSPKKHHNN DDDAPRSKTT GVSHRSGLPH GNVEVEQVAA  540
GWPSWLTSAS PEAVHGLVPL RAEDFEKREK IGQGTYSNVF RACEISTGRV MALKKIRVQN  600
FDTENIRFIA REIMILRRLD HPNIMKLEGI IASRNSNSMY FVFDYMEHDL EGLCSSPDIN  660
FTEAQIKCYM QQLLLAVEHC HLRGIMHRDI KAANILVNNK GVLKLADFGL ANIVTPRNKN  720
QLTSRVVTLW YRAPELLMGS TSYSVSVDLW SVGCVFAEIL TGRPPLKGRT EIEQLHKIYK  780
LCGSPDEELW RNNRLHPQTK MFGQQHQYEG CLRETFEEFP KTAVNLLENL FSIDPEKRGT  840
ASSALMSEYF NTKPYACDPS TLPKYPPNKE MDAKYREELQ RRRRATIKKR DNLVSKKTGK  900
SRRTIKDPLS KLPTQQETKK EAETEITLQT PSETSQATTR SEFPYTALSQ ATAPASGFAW  960
AGAKKRKEND AASTLTYNQP AGSASHVSGM SMAFAKNTFG LTINEDRPFL RPHVSLDSSG  1020
DILLYPNVHH KKEEDNMSQL NSDLRNVGAN PKIFQTNGMN EILRRTESDA RVAVRRPPRI  1080
ERG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5efq_A3e-7057189319345Cyclin-dependent kinase 13
5efq_C3e-7057189319345Cyclin-dependent kinase 13
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013638723.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300650.0KF430065.1 Brassica rapa WRKY transcription factor 58 (WRKY58) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638723.10.0PREDICTED: uncharacterized protein LOC106343907 isoform X2
TrEMBLM4FDH60.0M4FDH6_BRARP; Uncharacterized protein
STRINGBra039147.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13105810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-142WRKY DNA-binding protein 58