PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013638722.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | WRKY | ||||||||
Protein Properties | Length: 450aa MW: 49071.6 Da PI: 9.1844 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.6 | 4.5e-32 | 197 | 253 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK++kg e+prsYYrCt+ +Cpvkkkvers+ d+++++i+Y+g+H+he XP_013638722.1 197 DDGYNWRKYGQKPIKGCEYPRSYYRCTHVNCPVKKKVERSS-DGQITQIIYKGQHDHE 253 8****************************************.***************8 PP | |||||||
2 | WRKY | 104.6 | 5.2e-33 | 341 | 399 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+a+C+v+k+ver+++d k+v++tYeg+Hnh+ XP_013638722.1 341 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTANCTVRKHVERASTDVKAVITTYEGKHNHD 399 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-28 | 188 | 255 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-25 | 194 | 255 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-35 | 196 | 254 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.4E-25 | 197 | 252 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.076 | 197 | 255 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.6E-36 | 326 | 401 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.49E-29 | 333 | 401 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.711 | 336 | 401 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-37 | 341 | 400 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.2E-25 | 342 | 399 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MAVGDDVSSM RTTTLVAPTR PTITVPQRPP AIETAAYFLG GGDGLSLSPG PLSFVSSLFV 60 DSFPDLLTPD NQRTTSFSQL LAGAMSVSPG SGRSTAGMIA GGGPLFTIPS GFSPSSLLTS 120 PMFFPPQSPT QTVFVQPQSQ PKRPDSFPNQ MPPSTSTTVH GRRSCKAPQA DRYNNPAANN 180 NNTNRSYNVV HVDKPADDGY NWRKYGQKPI KGCEYPRSYY RCTHVNCPVK KKVERSSDGQ 240 ITQIIYKGQH DHERPQNRRG GGGELRGSGE IGDIHYIGGV GHMESSDDSG YANDHDNDND 300 DDNEDIPASK IRKIDGGVST THRSVTEPKI IVQTRSEVDL LDDGYRWRKY GQKVVKGNPH 360 PRSYYKCTTA NCTVRKHVER ASTDVKAVIT TYEGKHNHDV PAARNGTAPA TPATAGTSDH 420 HRMRSLSGNN VQQHMSPVLL RLKEEKLVIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-38 | 197 | 402 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 6e-38 | 197 | 402 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013638722.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430065 | 0.0 | KF430065.1 Brassica rapa WRKY transcription factor 58 (WRKY58) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013638722.1 | 0.0 | PREDICTED: probable WRKY transcription factor 58 isoform X1 | ||||
Swissprot | Q93WU7 | 0.0 | WRK58_ARATH; Probable WRKY transcription factor 58 | ||||
TrEMBL | A0A397ZI90 | 0.0 | A0A397ZI90_BRACM; Uncharacterized protein | ||||
STRING | Bo5g156460.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01080.1 | 1e-166 | WRKY DNA-binding protein 58 |
Publications ? help Back to Top | |||
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