PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013638694.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GATA | ||||||||
Protein Properties | Length: 288aa MW: 31580.1 Da PI: 6.5838 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.3 | 1.9e-17 | 210 | 245 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cgt++ Tp++Rrgp+g++tLCnaCGl+++ kg XP_013638694.1 210 CRHCGTSEnsTPMMRRGPEGPRTLCNACGLMWANKG 245 *********************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.411 | 66 | 101 | IPR010399 | Tify domain |
SMART | SM00979 | 3.0E-10 | 66 | 101 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.8E-11 | 71 | 100 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.066 | 134 | 176 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.5E-15 | 134 | 176 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 9.895 | 204 | 260 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.4E-10 | 204 | 257 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.43E-13 | 207 | 269 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.5E-15 | 209 | 251 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.62E-15 | 210 | 263 | No hit | No description |
Pfam | PF00320 | 2.5E-15 | 210 | 245 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 210 | 237 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MDDDGLHGNN GGMHSGGDEL PMHVQYEHHG MMDEHADDGM NGGLETDIPS HLGNPSDHRG 60 EVVDRGGENG DQLTLSYQGQ VYVFDHVLPE KVQAVLLLLG GREVPQTLPT TVGSPHQNNR 120 GLSGTPQRFS APQRQASLLR FREKRKGRNF DKTIRYTVRK EVALRMQRKK GQFTSAKSSN 180 EESALTGPDW GSGQSWALEG CETQKPEALC RHCGTSENST PMMRRGPEGP RTLCNACGLM 240 WANKGALRDL SKAPPPQITR NLPTNKNDES NLEADQMMVV AGDISNSN |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00369 | DAP | Transfer from AT3G21175 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013638694.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013638694.1 | 0.0 | PREDICTED: GATA transcription factor 24-like isoform X2 | ||||
Refseq | XP_013693130.1 | 0.0 | GATA transcription factor 24 isoform X2 | ||||
Swissprot | Q8GXL7 | 1e-167 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A078IM27 | 0.0 | A0A078IM27_BRANA; BnaC05g30820D protein | ||||
TrEMBL | A0A0D3CHP9 | 0.0 | A0A0D3CHP9_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g103560.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 1e-171 | ZIM-like 1 |
Publications ? help Back to Top | |||
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