PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638670.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 371aa    MW: 39863.4 Da    PI: 8.3908
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638670.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-13129173347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ I+r   + Rt+ q+ s+ qky
   XP_013638670.1 129 PWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPTQVASHAQKY 173
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.673122178IPR017930Myb domain
SuperFamilySSF466891.12E-16124177IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-18125176IPR006447Myb domain, plants
SMARTSM007171.7E-10126176IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-11128172IPR009057Homeodomain-like
CDDcd001673.05E-9129174No hitNo description
PfamPF002494.6E-11129173IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MTRRCSHCSY NGHNSRTCPT RGGGGGGGGT CGGNGGGSAS SSSSAAVKLF GVRLTDGSII  60
KKSASMGNLS ALAVHHRLSP LATGNHNDSP FSDHGRYSSQ ENGGYLSDDP GHGSGSIHHR  120
RVERKRGVPW TEEEHRLFLV GLQKLGKGDW RGISRNYVTS RTPTQVASHA QKYFIRHTCS  180
TRRKRRSSLF DMVTDEMVTD PSPTQEDQTL IKEPENKTYL PSLELKLNNA TESEVVPPVE  240
QPEEVIEPPN AISPMLVPGS FFPPCFPVTY TIWLPATSSS LQGTDHTLEV SASSQQHQVL  300
KPKPGFAKER ANMDELVGLS QLSIGMETSH ETETPMSLKL IGEPSRPSAF HSNGSVSGSG  360
LSKGSSAIQA T
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013638670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638670.10.0PREDICTED: transcription factor MYB1R1
TrEMBLA0A0D3CJM70.0A0A0D3CJM7_BRAOL; Uncharacterized protein
STRINGBo5g126180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93132735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.11e-167MYB_related family protein