PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013638639.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 530aa MW: 59615.4 Da PI: 7.8024 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.4 | 2.2e-12 | 24 | 103 | 12 | 97 |
HTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 12 ksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++ l +p f+ +h + + kt +l++ s ++W vk+ ++ lt+GW++F+ ++L+ gD+ +F+++g++ f +v++f XP_013638639.1 24 HTH-LNIPVAFFLKHvqglS--NDHIKTAKLTTdASTKTWLVKV--DGV----RLTDGWEDFAVGHDLRIGDITIFRHEGEMVF--HVTAF 103 444.99**********9552..444456666554999*******..555....5***********************9998888..88776 PP | |||||||
2 | B3 | 59.4 | 6.1e-19 | 163 | 251 | 6 | 95 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +++++l+ +rl++p +f +++g+++ ++k+++l +++grsW+++++y+k s +++ + GW++F+ +ng+++g +Fkl+g +++ +v++ XP_013638639.1 163 VSPSSLRFDRLYVPISFSRSNGLDNMSGKEIVLLNQEGRSWNLNITYTKASVQTLVGPGWRRFCAENGMNQGHHYTFKLVG-KSAPPVIR 251 5677788899*********************************************************************99.67667765 PP | |||||||
3 | B3 | 59.8 | 4.9e-19 | 272 | 361 | 6 | 98 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++s++l+++ l++ +kf++++g+k + +++l++e g +W++ l+y k+ ++++l+ GWk F++ ng+k+gD+++Fk+++ ++ ++v+ +++ XP_013638639.1 272 ISSNSLRTDKLYIQRKFVNANGLK--GLSEIILKSECGGRWSLGLRYYKSLDHTYLGPGWKTFCQVNGIKTGDSFMFKVVE-TGDKPVLLLCS 361 57899999*************988..4559************************************************887.66667887775 PP | |||||||
4 | B3 | 49 | 1.1e-15 | 430 | 528 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 f+k ++++ +lk+ l+lp f++ +g++k++ ++tl d++g + +v +++++ + l+kGW+eF++a+g+k+g +++++l+++ +e+ + XP_013638639.1 430 FVKLTLTPRALKTYKLMLPLGFTRVNGINKPG--KITLLDKDGVKKQVVDLLDQNRNIgiMRLGKGWREFCDAHGVKVGQSFLLELIWEdEEAIP 522 889999999******************99766..7********6666665565555445699*************************99899999 PP EEEEE- CS B3 93 vvkvfr 98 v+k++ XP_013638639.1 523 VLKFCT 528 988885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.2E-20 | 9 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.785 | 12 | 106 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.29E-17 | 12 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.98E-13 | 13 | 103 | No hit | No description |
SMART | SM01019 | 1.6E-17 | 15 | 106 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.9E-19 | 151 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-17 | 152 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.916 | 158 | 256 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.69E-13 | 158 | 245 | No hit | No description |
SMART | SM01019 | 3.9E-20 | 159 | 256 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.0E-17 | 163 | 251 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-16 | 265 | 360 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.311 | 267 | 362 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-20 | 268 | 363 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.26E-17 | 271 | 361 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.3E-17 | 272 | 361 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.59E-14 | 272 | 361 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 9.3E-16 | 423 | 528 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.26E-16 | 426 | 527 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.48E-14 | 429 | 519 | No hit | No description |
PROSITE profile | PS50863 | 11.702 | 430 | 529 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.6E-15 | 430 | 528 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.9E-21 | 430 | 530 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MADDQSLRSP MTPHFFQPLL PGFHTHLNIP VAFFLKHVQG LSNDHIKTAK LTTDASTKTW 60 LVKVDGVRLT DGWEDFAVGH DLRIGDITIF RHEGEMVFHV TAFGPSCCDI QYTSASSHNI 120 NDDSQDQTNN TENSSGEKRK RVKKKPRRKE ESSSDHSHFM AHVSPSSLRF DRLYVPISFS 180 RSNGLDNMSG KEIVLLNQEG RSWNLNITYT KASVQTLVGP GWRRFCAENG MNQGHHYTFK 240 LVGKSAPPVI RLSLAEPAPE PSLHHSYYVG SISSNSLRTD KLYIQRKFVN ANGLKGLSEI 300 ILKSECGGRW SLGLRYYKSL DHTYLGPGWK TFCQVNGIKT GDSFMFKVVE TGDKPVLLLC 360 SYNHGKIPLE CSEESDDVNS LSSDTSSGES QESEEENFED EGSSEESFEM VKRENSSRCR 420 ASSSYSQDRF VKLTLTPRAL KTYKLMLPLG FTRVNGINKP GKITLLDKDG VKKQVVDLLD 480 QNRNIGIMRL GKGWREFCDA HGVKVGQSFL LELIWEDEEA IPVLKFCTKL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 145 | EKRKRVKKKP |
2 | 139 | 147 | KRVKKKPRR |
3 | 140 | 146 | RVKKKPR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013638639.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013638639.1 | 0.0 | PREDICTED: B3 domain-containing protein REM17-like | ||||
Swissprot | Q84WP3 | 1e-149 | REM17_ARATH; B3 domain-containing protein REM17 | ||||
TrEMBL | A0A0D3CDE8 | 0.0 | A0A0D3CDE8_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g044980.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5781 | 16 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 1e-137 | B3 family protein |
Publications ? help Back to Top | |||
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