PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638600.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 565aa    MW: 59518 Da    PI: 10.0589
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638600.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.5e-11197241144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                      r++W++eEd  l+ avk++G g+W+ Iar     +Rt+ q+  rw
   XP_013638600.1 197 RQKWSAEEDADLIAAVKRFGEGNWAHIARGEFrGRRTASQLSQRW 241
                      89**************************96555799**9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-14190246IPR009057Homeodomain-like
PROSITE profilePS5129414.844192249IPR017930Myb domain
SuperFamilySSF466892.37E-12194247IPR009057Homeodomain-like
SMARTSM007172.8E-8196247IPR001005SANT/Myb domain
PfamPF002491.7E-8197241IPR001005SANT/Myb domain
CDDcd116603.08E-13198246No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MVDSSNKRRK RTISEGDIAT LLQRYDAETI LRLLQEMAFY SDVKKMDWNE LVKKTTTGIT  60
NAREFQMLWR HLSYRDPLLP LVEDDAQPLD DDSDVECELE ASPAVSVEAS VEAVAHVKVI  120
AASYVPRESD ILHESTSEAP LTINIPYALP EGTRESPWSS RGMNITFPVC LQKATSTEGI  180
NGNVSASTSM ASQRKTRQKW SAEEDADLIA AVKRFGEGNW AHIARGEFRG RRTASQLSQR  240
WPHLRRRYDT STSASQSQIA VNHALSLALG NRPPSKKVAV GTQGSGGRPS QGQQQSKPVA  300
VQTLSRAATT VSASKSRVVN KTTARSTSRS DLMVTANSAA AAACIGGVMA AASVPKVESV  360
KNAPTASMPR PPGSLVEPGK TVSPFSITKA VGPANTPPLA NGNLKSVTPS PSSIKSPLMG  420
SPSEGSTASK IVSNQGVFSA SVPATVLPPK PTAETVICKP DGGHKEQARG DGASSVVAIQ  480
SNKMTSTNSE ISRGKQAATH AQTAVLGAAN QSLVDKTAVP SISGAGSESK SKCEVNNKVG  540
SVVTVSKACG KPPEVATVRG TGQDV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013638600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638600.10.0PREDICTED: uncharacterized protein LOC106343821
TrEMBLA0A0D3C8U40.0A0A0D3C8U4_BRAOL; Uncharacterized protein
STRINGBo5g010120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.10.0MYB_related family protein