PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013638581.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 268aa MW: 28598.1 Da PI: 4.6035

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013638581.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.1	7.1e-36	5	130	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +GfrF Ptd+e+v++y++ k g + ++++++i vdi++++Pw+Lp k + +++++ wyfF+++d+ +g+r++r+tksg+Wk+tg + +++ XP_013638581.1 5 VGFRFIPTDQEIVDYYIRLKNIGGSdtNHVDKAIGAVDICSFDPWELPsKsRRESRDQIWYFFCRKDN---RGERQSRKTKSGFWKKTGPTMDIF 96 7**************9986666556677778***********433445577799*988...589******************* PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyr 127 +k ++e++g k++Lvf+ +k+ Wvmhey XP_013638581.1 97 QKrgDREKIGEKRVLVFHLSG--CKSKSAWVMHEYV 130 9887889*******433..3359******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.077	3	150	IPR003441	NAC domain
SuperFamily	SSF101941	1.31E-36	4	150	IPR003441	NAC domain
Pfam	PF02365	1.6E-22	5	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MENRVGFRFI PTDQEIVDYY IRLKNIGGSD TNHVDKAIGA VDICSFDPWE LPSKSRRESR 60 DQIWYFFCRK DNRGERQSRK TKSGFWKKTG PTMDIFQKRG DREKIGEKRV LVFHLSGCKS 120 KSAWVMHEYV ATFLPPTDHM TYTLCKLKFK GDASDLPSSS GADGGGDGGC GDGGGGGGDG 180 DGGGGDGYDG GDGCGGVDGD GGGAGDCDGG GGGGGFDGGG GGGGVDEHNQ FLITHNSGGY 240 EFNVSTDDFN CFLNYNDDEE QGNTMFMQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-17	6	129	20	140	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-17	6	129	20	140	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-17	6	129	20	140	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-17	6	129	20	140	NO APICAL MERISTEM PROTEIN
3swm_A	7e-17	6	129	23	143	NAC domain-containing protein 19
3swm_B	7e-17	6	129	23	143	NAC domain-containing protein 19
3swm_C	7e-17	6	129	23	143	NAC domain-containing protein 19
3swm_D	7e-17	6	129	23	143	NAC domain-containing protein 19
3swp_A	7e-17	6	129	23	143	NAC domain-containing protein 19
3swp_B	7e-17	6	129	23	143	NAC domain-containing protein 19
3swp_C	7e-17	6	129	23	143	NAC domain-containing protein 19
3swp_D	7e-17	6	129	23	143	NAC domain-containing protein 19
4dul_A	5e-17	6	129	20	140	NAC domain-containing protein 19
4dul_B	5e-17	6	129	20	140	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013638581.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013638581.1	0.0	PREDICTED: NAC domain-containing protein 5-like isoform X3
Swissprot	O81914	4e-66	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	A0A3P6CE56	1e-130	A0A3P6CE56_BRACM; Uncharacterized protein
STRING	Bra033302.1-P	1e-127	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	2e-67	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]