PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013638576.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 456aa    MW: 51115.9 Da    PI: 5.7171
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013638576.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1095.4e-3441492127
             NAM   2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikevdiykvePwdLp.k.kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     p+G+rF+Ptdee+vv+y ++k +e+++ +++ev+++vdiy+++Pw+L+ k ++k++++  wyfF ++++    ++r++r++ sg+W++tg++k++
  XP_013638576.1   4 PVGYRFRPTDEEIVVHYVRPKnIESNTSHVDEVMNTVDIYSFDPWELRfKsRIKSRDEvVWYFFGCKKRMR--NNRQRRTIPSGFWSNTGETKPI 96 
                     89*****************99567777889999**************85247777766799***9998875..569******************* PP

             NAM  93 lsk.....kgelvglkktLvfy.............kgrapkgektdWvmheyr 127
                     ++k     ++e++g k+++vf              k ++++ +k+dWvmhey 
  XP_013638576.1  97 IRKkggggDHEKIGEKRVFVFKysskipggsksksKSKSKSKSKSDWVMHEYV 149
                     **9898887888*********8899999888876656777778*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.8273173IPR003441NAC domain
SuperFamilySSF1019411.83E-373173IPR003441NAC domain
PfamPF023651.6E-204149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MVDPVGYRFR PTDEEIVVHY VRPKNIESNT SHVDEVMNTV DIYSFDPWEL RFKSRIKSRD  60
EVVWYFFGCK KRMRNNRQRR TIPSGFWSNT GETKPIIRKK GGGGDHEKIG EKRVFVFKYS  120
SKIPGGSKSK SKSKSKSKSK SDWVMHEYVA TFSSPDSQRM TTSTYTVCKV MFKGDPTDLP  180
SSSSLIPQLN SNSSGGLSTE SEVQNPNQIT SSVSLIPHVN SSSEGLSTEA EVEYRDRGGM  240
SHQITSSISS IPHVNNNNSG VLSTETEDPR LFSGFLYLEE DAHFEDETLR DLNSLPNNDD  300
AEEEEWLVNL WSMQGDRNDH RPKMPLTGFI SDDDDDDDSD SDSISTKTCS IKSSSTCVTF  360
GNSNRLIDQI IDLPESPRST IESVSLTQEV SKALGANSAI SEKKMSPCDD DAQVSEIGGD  420
QMGQEMVIKN KRAGFIYRMI QKFAKKIKLC SCVSRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-16417018162NO APICAL MERISTEM PROTEIN
1ut4_B2e-16417018162NO APICAL MERISTEM PROTEIN
1ut7_A2e-16417018162NO APICAL MERISTEM PROTEIN
1ut7_B2e-16417018162NO APICAL MERISTEM PROTEIN
3swm_A2e-16417021165NAC domain-containing protein 19
3swm_B2e-16417021165NAC domain-containing protein 19
3swm_C2e-16417021165NAC domain-containing protein 19
3swm_D2e-16417021165NAC domain-containing protein 19
3swp_A2e-16417021165NAC domain-containing protein 19
3swp_B2e-16417021165NAC domain-containing protein 19
3swp_C2e-16417021165NAC domain-containing protein 19
3swp_D2e-16417021165NAC domain-containing protein 19
4dul_A2e-16417018162NAC domain-containing protein 19
4dul_B2e-16417018162NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013638576.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638575.10.0PREDICTED: NAC domain-containing protein 5-like isoform X3
RefseqXP_013638576.10.0PREDICTED: NAC domain-containing protein 5-like isoform X4
TrEMBLA0A0D3C7220.0A0A0D3C722_BRAOL; Uncharacterized protein
STRINGBo5g002910.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.16e-84NAC domain containing protein 5