PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013638316.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 444aa MW: 47093.7 Da PI: 7.9184 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.6 | 1.8e-12 | 45 | 70 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C yG+rC+F+H++ XP_013638316.1 45 DEPDCIYYLRTGACGYGSRCRFNHPR 70 6899********************96 PP | |||||||
2 | zf-CCCH | 38.4 | 2e-12 | 95 | 120 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f+rtGtCk+G++Ck++H++ XP_013638316.1 95 GQPVCQHFMRTGTCKFGATCKYHHPR 120 5789********************96 PP | |||||||
3 | zf-CCCH | 37.6 | 3.7e-12 | 141 | 165 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG+Ck+G +C+F+H+ XP_013638316.1 141 GEKECSYYLRTGQCKFGLTCRFNHP 165 7899********************9 PP | |||||||
4 | zf-CCCH | 40 | 6.7e-13 | 291 | 315 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++f+rtG Ck+G++C+++H+ XP_013638316.1 291 DQPECQYFMRTGDCKFGSSCRYHHP 315 689*********************9 PP | |||||||
5 | zf-CCCH | 32.7 | 1.3e-10 | 338 | 363 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C +fa+ G+Ck+G+ CkF H++ XP_013638316.1 338 GVAQCTHFAQHGICKFGPACKFDHSM 363 6788********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.446 | 43 | 71 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.5E-5 | 43 | 70 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.6E-10 | 45 | 70 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 47 | 71 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-5 | 49 | 70 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.6E-6 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.92 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 94 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.2E-10 | 95 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-5 | 98 | 120 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 139 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.54 | 139 | 167 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 141 | 165 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.11E-6 | 141 | 169 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-4 | 145 | 164 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-6 | 289 | 316 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.155 | 289 | 317 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-10 | 291 | 315 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 292 | 318 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-5 | 295 | 315 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-4 | 336 | 363 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.723 | 336 | 364 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-8 | 338 | 362 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.19E-5 | 339 | 364 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.6E-4 | 342 | 363 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 444 aa Download sequence Send to blast |
MERYGRAGEE GSRSDPSLEW TTALQTGVQA SVWRAGGESY PERPDEPDCI YYLRTGACGY 60 GSRCRFNHPR DRGAVVGGVR GGGGGGDGAL PERMGQPVCQ HFMRTGTCKF GATCKYHHPR 120 QGGGSVAPVS LSYLGYPLRP GEKECSYYLR TGQCKFGLTC RFNHPVPQQQ QQPQPQPQLH 180 TIYPTLQSQP SQQYGLVLAR PSLLPGSYLP SHYGPPMVLP PGMVTYPGWN PFQPSLTAMP 240 SPGTQPSIGP SSVYGMAPLS PSGAAYTGTY QSGGPSSLTI SKEEPFPQRP DQPECQYFMR 300 TGDCKFGSSC RYHHPLDAVQ PKTGVVLFSS IGLPLRPGVA QCTHFAQHGI CKFGPACKFD 360 HSMSSSLSYS PSASSLTDMP VAPYPIGSSS LSGASAPVSL SNEPTTEAVT AVSSPMVSGQ 420 EPAETSGDSA SVSGSIEAKT SSSS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013638316.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013638316.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 34-like | ||||
Swissprot | Q9SQU4 | 0.0 | C3H34_ARATH; Zinc finger CCCH domain-containing protein 34 | ||||
TrEMBL | A0A0D3CMB9 | 0.0 | A0A0D3CMB9_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EQJ5 | 0.0 | A0A3P6EQJ5_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g143520.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1779 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 0.0 | C3H family protein |
Publications ? help Back to Top | |||
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